Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS08880	HMPREF1058_RS08875	HMPREF1058_RS08870	HMPREF1058_RS08865	HMPREF1058_RS08860
carbon source	L-Rhamnose 20 mM (C)	N.D.	-6.4	-6.0	-6.4	-6.3
carbon source	L-Rhamnose 20 mM (C)	N.D.	-6.1	-6.6	-5.6	-6.4
carbon source	L-Fucose 20 mM (C)	N.D.	-5.5	-2.9	-3.5	-6.5
carbon source	L-Fucose 20 mM (C)	N.D.	-4.9	-3.0	-2.9	-5.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	N.D.	-5.8	-0.6	-2.5	-2.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	N.D.	-5.9	-0.6	-2.2	-1.8
carbon source	L-Fucose 2.5 mg/ml (C)	N.D.	-4.8	-0.3	-0.6	-4.5
carbon source	L-Fucose 2.5 mg/ml (C)	N.D.	-5.0	-0.0	-0.5	-4.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	N.D.	-5.1	-0.6	-1.9	-1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	N.D.	-6.1	-0.4	-0.8	-1.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	N.D.	-6.2	-0.3	-0.7	-1.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5	N.D.	-5.0	-0.5	-1.5	-1.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	N.D.	-5.4	-0.1	-1.0	-1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	N.D.	-5.2	-0.5	-0.7	-1.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	N.D.	-4.7	-0.3	-1.1	-1.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	N.D.	-5.3	-0.3	-0.5	-1.3
carbon source	Arabinan from sugar beet 5mg/ml (C)	N.D.	-6.1	-0.3	-0.3	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	N.D.	-5.1	-0.3	-1.1	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	N.D.	-5.2	-0.2	-0.6	-1.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	N.D.	-4.7	-0.2	-0.8	-1.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	N.D.	-4.8	-0.8	-0.6	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	N.D.	-5.3	-0.4	-0.3	-1.0
carbon source	Arabinan from sugar beet 5mg/ml (C)	N.D.	-6.3	-0.2	-0.1	-0.3
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	N.D.	-4.7	-0.6	-0.7	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	N.D.	-4.9	-0.3	-0.7	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	N.D.	-4.5	-0.4	-0.6	-1.1
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	N.D.	-4.2	-0.6	-0.8	-0.9
carbon source	Pectic galactan from potato 5mg/ml (C)	N.D.	-5.8	-0.2	-0.3	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	N.D.	-4.4	-0.1	-0.6	-1.2
carbon source	D-Glucose 5 mg/ml (C)	N.D.	-4.1	-0.5	-0.9	-0.8