Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08500 and HMPREF1058_RS08495 overlap by 20 nucleotidesHMPREF1058_RS08495 and HMPREF1058_RS08490 are separated by 223 nucleotidesHMPREF1058_RS08490 and HMPREF1058_RS08485 overlap by 17 nucleotidesHMPREF1058_RS08485 and HMPREF1058_RS08480 are separated by 77 nucleotides HMPREF1058_RS08500: HMPREF1058_RS08500 - CidA/LrgA family protein, at 1,126,634 to 1,126,987 _RS08500 HMPREF1058_RS08495: HMPREF1058_RS08495 - LrgB family protein, at 1,126,968 to 1,127,663 _RS08495 HMPREF1058_RS08490: HMPREF1058_RS08490 - DUF2156 domain-containing protein, at 1,127,887 to 1,128,789 _RS08490 HMPREF1058_RS08485: HMPREF1058_RS08485 - GNAT family N-acetyltransferase, at 1,128,773 to 1,129,783 _RS08485 HMPREF1058_RS08480: HMPREF1058_RS08480 - TIGR00159 family protein, at 1,129,861 to 1,130,625 _RS08480
Group Condition HMPREF1058_RS08500 HMPREF1058_RS08495 HMPREF1058_RS08490 HMPREF1058_RS08485 HMPREF1058_RS08480
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -2.3 -0.2 -1.4 -1.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.3 -1.0 -0.5 -1.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -3.0 +0.2 +0.4 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.4 -0.3 -0.4 -0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -1.7 -0.2 -0.0 -0.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -1.5 -0.3 -0.0 -0.9 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 -0.5 -0.2 -2.1 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.0 -0.5 -0.2 -1.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -1.5 -0.1 -0.0 -1.0 N.D.
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) -1.6 -0.5 +0.0 -0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.3 -0.0 -0.3 -0.6 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.2 -0.4 +0.1 -1.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -1.4 +0.1 +0.0 -1.0 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.6 +0.0 +0.2 -1.8 N.D.
carbon source D-Mannose 20 mM (C) -0.1 +0.1 -0.1 -1.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -1.5 +0.2 +0.1 -0.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -1.4 +0.1 +0.1 -0.9 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.0 -0.0 +0.1 -2.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -1.2 +0.2 +0.1 -0.9 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.4 -0.3 +0.2 -1.4 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.7 +0.0 -1.3 N.D.
carbon source D-Galactose 20 mM (C) +0.2 -0.2 +0.4 -2.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -1.2 +0.2 +0.2 -0.7 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) -1.4 -0.5 -0.0 +0.5 N.D.
carbon source Sucrose 20 mM (C) +0.5 +0.1 +0.2 -1.7 N.D.
carbon source D-Galactose 20 mM (C) +1.0 -0.0 +0.2 -2.1 N.D.
carbon source Sucrose 20 mM (C) +0.2 +0.3 +0.4 -1.7 N.D.
carbon source D-Mannose 20 mM (C) +0.9 +0.3 -0.0 -1.6 N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +0.8 +0.3 +0.2 -1.3 N.D.
carbon source D-Galactose 20 mM (C) +1.3 +0.3 +0.5 -1.7 N.D.
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