Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08365 and HMPREF1058_RS08360 are separated by 52 nucleotidesHMPREF1058_RS08360 and HMPREF1058_RS08355 overlap by 11 nucleotidesHMPREF1058_RS08355 and HMPREF1058_RS08350 are separated by 171 nucleotidesHMPREF1058_RS08350 and HMPREF1058_RS08345 overlap by 4 nucleotides HMPREF1058_RS08365: HMPREF1058_RS08365 - glycoside hydrolase family 127 protein, at 1,181,189 to 1,183,540 _RS08365 HMPREF1058_RS08360: HMPREF1058_RS08360 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,183,593 to 1,183,934 _RS08360 HMPREF1058_RS08355: HMPREF1058_RS08355 - hypothetical protein, at 1,183,924 to 1,184,199 _RS08355 HMPREF1058_RS08350: HMPREF1058_RS08350 - exonuclease SbcCD subunit D C-terminal domain-containing protein, at 1,184,371 to 1,185,573 _RS08350 HMPREF1058_RS08345: HMPREF1058_RS08345 - AAA family ATPase, at 1,185,570 to 1,188,653 _RS08345
Group Condition HMPREF1058_RS08365 HMPREF1058_RS08360 HMPREF1058_RS08355 HMPREF1058_RS08350 HMPREF1058_RS08345
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 -0.3 -0.1 -3.9 -0.5 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.3 -0.5 -2.9 -0.7 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.2 -0.1 -3.1 -0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day5 -0.2 +0.3 -2.5 -0.8 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.3 -0.2 -2.3 -0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.2 -0.4 -1.7 -0.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.2 +0.1 -2.3 -0.5 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.2 -0.1 -1.9 -0.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.2 +0.2 -2.4 -0.2 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.4 +0.0 -1.8 -0.6 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -0.1 -0.0 -2.0 -0.4 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day4 -0.1 -0.1 -1.7 -0.4 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5 -0.2 +0.0 -1.8 -0.4 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.4 +0.1 -1.6 -0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.4 +0.3 -1.5 -0.6 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.2 -0.1 -1.7 -0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 -0.3 +0.1 -1.7 -0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.0 -0.1 -1.7 -0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.1 +0.1 -2.0 -0.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 -0.1 +0.2 -1.7 -0.4 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.0 +0.4 -1.6 -0.5 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.2 +0.1 -1.5 -0.4 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -0.2 +0.0 -1.3 -0.6 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 -0.5 -0.4 -0.3 -0.9 +0.3
carbon source D-Galactose 20 mM (C) +0.1 +0.3 -1.4 +0.3 +0.3
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +1.4 -0.1 -1.2 +0.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.0 -0.8 +1.2 -0.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.1 -0.7 +1.0 -0.2 +0.6
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 -0.3 +1.6 -0.0 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 -0.1 +2.1 -0.2 +0.3
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HMPREF1058_RS08365
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HMPREF1058_RS08360
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HMPREF1058_RS08350
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HMPREF1058_RS08345
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