Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08155 and HMPREF1058_RS08150 overlap by 4 nucleotidesHMPREF1058_RS08150 and HMPREF1058_RS08145 are separated by 190 nucleotidesHMPREF1058_RS08145 and HMPREF1058_RS08140 are separated by 164 nucleotidesHMPREF1058_RS08140 and HMPREF1058_RS08135 are separated by 95 nucleotides HMPREF1058_RS08155: HMPREF1058_RS08155 - glycosyl hydrolase family 30, at 34,430 to 35,857 _RS08155 HMPREF1058_RS08150: HMPREF1058_RS08150 - hypothetical protein, at 35,854 to 37,287 _RS08150 HMPREF1058_RS08145: HMPREF1058_RS08145 - PD-(D/E)XK nuclease family transposase, at 37,478 to 38,398 _RS08145 HMPREF1058_RS08140: HMPREF1058_RS08140 - glycoside hydrolase family protein, at 38,563 to 40,176 _RS08140 HMPREF1058_RS08135: HMPREF1058_RS08135 - glycoside hydrolase, at 40,272 to 41,657 _RS08135
Group Condition HMPREF1058_RS08155 HMPREF1058_RS08150 HMPREF1058_RS08145 HMPREF1058_RS08140 HMPREF1058_RS08135
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.5 -0.2 +0.0 -0.3 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.3 +0.2 +0.2 -0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.3 +0.2 +0.3 -0.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.5 -0.2 -0.3 +0.0 +0.4
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.1 +0.6 +0.2 -0.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.5 -0.1 -0.3 -0.0 +0.4
carbon source Sucrose 20 mM (C) +0.1 -0.4 +0.3 +0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.1 +0.5 +0.3 +0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.1 +0.4 +0.3 +0.1 -0.3
carbon source Polygalacturonic 5 mg/ml (C) +0.3 +0.1 +0.5 +0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.2 +0.4 +0.2 +0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.0 +0.7 +0.3 +0.1 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.0 +0.7 +0.3 +0.1 -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.1 +0.7 +0.0 -0.3
carbon source Galactose 1-phosphate dipotassium salt (C) -0.0 -0.2 +0.8 +0.1 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 -0.1 +0.6 +0.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.3 +0.4 +0.0 +0.4 -0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.3 +0.1 +0.5 +0.0 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.2 +0.4 +0.2 +0.3 +0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.2 +0.3 +0.5 +0.1 +0.3
carbon source Galactose 1-phosphate dipotassium salt (C) -0.1 +0.2 +0.8 +0.1 +0.3
carbon source NAG (C) +0.3 +0.2 +0.2 +0.0 +0.6
carbon source D-Galactose 2.5 mg/ml (C) +0.1 +0.2 +0.6 +0.1 +0.4
carbon source Pectic galactan from potato 5mg/ml (C) +0.2 +0.3 +0.3 +0.2 +0.4
carbon source Polygalacturonic 5 mg/ml (C) +0.2 +0.1 +0.6 +0.2 +0.4
carbon source Sucrose 20 mM (C) +0.4 +0.2 +0.3 +0.1 +0.4
carbon source NAG (C) +0.4 -0.1 +0.3 +0.2 +0.6
carbon source D-Mannose 2.5 mg/ml (C) +0.2 +0.3 +0.4 +0.2 +0.4
carbon source D-Glucose 5 mg/ml (C) +0.3 +0.4 +0.5 +0.1 +0.4
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.4 +0.4 +0.4 +0.4 +0.2
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HMPREF1058_RS08155
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HMPREF1058_RS08150
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HMPREF1058_RS08140
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HMPREF1058_RS08135
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