Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08085 and HMPREF1058_RS08080 are separated by 20 nucleotidesHMPREF1058_RS08080 and HMPREF1058_RS08075 are separated by 121 nucleotidesHMPREF1058_RS08075 and HMPREF1058_RS08070 are separated by 177 nucleotidesHMPREF1058_RS08070 and HMPREF1058_RS08065 are separated by 8 nucleotides HMPREF1058_RS08085: HMPREF1058_RS08085 - redoxin domain-containing protein, at 56,513 to 57,703 _RS08085 HMPREF1058_RS08080: HMPREF1058_RS08080 - TlpA family protein disulfide reductase, at 57,724 to 59,832 _RS08080 HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727 _RS08075 HMPREF1058_RS08070: HMPREF1058_RS08070 - alpha-L-fucosidase, at 60,905 to 62,944 _RS08070 HMPREF1058_RS08065: HMPREF1058_RS08065 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 62,953 to 63,855 _RS08065
Group Condition HMPREF1058_RS08085 HMPREF1058_RS08080 HMPREF1058_RS08075 HMPREF1058_RS08070 HMPREF1058_RS08065
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.1 +0.1 +0.2 -0.9 -4.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.5 +0.3 -0.5 -0.4 -4.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.3 -0.1 +0.2 -0.9 -3.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.2 -0.0 -0.3 -0.6 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.3 +0.0 -0.3 -0.2 -3.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.4 +0.2 -0.5 -0.4 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.0 +0.1 -0.1 -0.5 -3.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.3 -0.2 -0.2 -0.3 -2.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.0 +0.1 -0.1 -0.2 -3.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.3 -0.1 +0.1 -0.1 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.2 +0.2 -0.0 -0.6 -2.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.5 +0.2 -0.1 +0.2 -2.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.0 -0.2 +0.3 -0.7 -2.6
carbon source D-Mannose 20 mM (C) -0.3 +0.1 -0.7 -0.3 -1.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.1 -0.0 -0.1 -0.2 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.0 +0.1 +0.0 -0.2 -2.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.5 +0.0 -0.4 -0.5 -2.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.3 +0.1 -0.2 -0.1 -2.4
carbon source L-Arabinose 20 mM (C) +0.0 +0.0 -0.0 +0.1 -2.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.1 +0.0 -0.2 -0.4 -2.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.1 -0.2 +0.2 -0.7 -2.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.1 -0.3 +0.3 -0.7 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.2 -0.2 +0.3 -0.9 -1.7
carbon source D-Mannose (C) +0.2 +0.2 +0.1 +0.5 -2.2
carbon source NAG (C) -0.4 +0.1 +0.6 +0.4 -1.7
carbon source NAG (C) -0.4 +0.2 +0.7 +0.4 -1.7
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 +0.1 +0.4 +0.8 -1.5
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 +0.1 +0.9 +0.4 -1.4
carbon source D-Glucose 5 mg/ml (C) +0.0 +0.2 +0.6 +0.8 -1.3
carbon source D-Glucose 5 mg/ml (C) +0.4 +0.2 +0.6 +0.6 -1.2
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