Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08045 and HMPREF1058_RS08040 are separated by 132 nucleotidesHMPREF1058_RS08040 and HMPREF1058_RS08035 are separated by 88 nucleotidesHMPREF1058_RS08035 and HMPREF1058_RS08030 are separated by 36 nucleotidesHMPREF1058_RS08030 and HMPREF1058_RS08025 are separated by 242 nucleotides HMPREF1058_RS08045: HMPREF1058_RS08045 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 66,708 to 67,748 _RS08045 HMPREF1058_RS08040: HMPREF1058_RS08040 - HD domain-containing protein, at 67,881 to 69,116 _RS08040 HMPREF1058_RS08035: HMPREF1058_RS08035 - orotidine-5'-phosphate decarboxylase, at 69,205 to 70,023 _RS08035 HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175 _RS08030 HMPREF1058_RS08025: HMPREF1058_RS08025 - phosphoribosylformylglycinamidine cyclo-ligase, at 71,418 to 72,587 _RS08025
Group Condition HMPREF1058_RS08045 HMPREF1058_RS08040 HMPREF1058_RS08035 HMPREF1058_RS08030 HMPREF1058_RS08025
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day2 N.D. -0.2 N.D. N.D. -6.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 N.D. -0.1 N.D. N.D. -6.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 N.D. -0.2 N.D. N.D. -6.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3 N.D. -0.3 N.D. N.D. -6.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 N.D. -0.3 N.D. N.D. -6.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 N.D. -0.2 N.D. N.D. -6.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day2 N.D. -0.4 N.D. N.D. -6.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 N.D. -0.3 N.D. N.D. -6.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day2 N.D. -0.0 N.D. N.D. -6.7
carbon source D-Xylose 20 mM (C) N.D. -0.4 N.D. N.D. -6.3
carbon source D-Galactose 20 mM (C) N.D. -1.1 N.D. N.D. -5.5
carbon source Fructose-6-phosphate (C) N.D. -0.2 N.D. N.D. -6.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 N.D. -0.3 N.D. N.D. -6.2
carbon source a-Cyclodextrin (C) N.D. -0.3 N.D. N.D. -6.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day4 N.D. +0.0 N.D. N.D. -6.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 N.D. -0.1 N.D. N.D. -6.4
carbon source D-Galactose 20 mM (C) N.D. -1.0 N.D. N.D. -5.3
carbon source D-Mannose 20 mM (C) N.D. -0.1 N.D. N.D. -6.2
carbon source Beta-Lactose 20 mM (C) N.D. -0.2 N.D. N.D. -6.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day5 N.D. -0.1 N.D. N.D. -6.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 N.D. -0.0 N.D. N.D. -6.2
carbon source Dextrin from potato starch 5 mg/ml (C) N.D. +0.4 N.D. N.D. -6.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4 N.D. +0.5 N.D. N.D. -6.1
carbon source D-Mannose 20 mM (C) N.D. +0.4 N.D. N.D. -6.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 N.D. +0.8 N.D. N.D. -5.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 N.D. +1.3 N.D. N.D. -5.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 N.D. +2.0 N.D. N.D. -5.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. +2.1 N.D. N.D. -5.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 N.D. +1.7 N.D. N.D. -4.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. +2.3 N.D. N.D. -4.3
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HMPREF1058_RS08045
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HMPREF1058_RS08040
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HMPREF1058_RS08030
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HMPREF1058_RS08025
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