Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS08010 and HMPREF1058_RS08005 are separated by 78 nucleotidesHMPREF1058_RS08005 and HMPREF1058_RS08000 overlap by 14 nucleotidesHMPREF1058_RS08000 and HMPREF1058_RS07995 are separated by 18 nucleotidesHMPREF1058_RS07995 and HMPREF1058_RS07990 are separated by 109 nucleotides HMPREF1058_RS08010: HMPREF1058_RS08010 - family 10 glycosylhydrolase, at 75,767 to 77,446 _RS08010 HMPREF1058_RS08005: HMPREF1058_RS08005 - carbon starvation protein A, at 77,525 to 78,955 _RS08005 HMPREF1058_RS08000: HMPREF1058_RS08000 - hypothetical protein, at 78,942 to 79,163 _RS08000 HMPREF1058_RS07995: HMPREF1058_RS07995 - hypothetical protein, at 79,182 to 79,673 _RS07995 HMPREF1058_RS07990: HMPREF1058_RS07990 - family 20 glycosylhydrolase, at 79,783 to 82,089 _RS07990
Group Condition HMPREF1058_RS08010 HMPREF1058_RS08005 HMPREF1058_RS08000 HMPREF1058_RS07995 HMPREF1058_RS07990
carbon source Sucrose 20 mM (C) -0.1 -0.0 -2.1 -0.3 -0.0
carbon source D-Mannose 20 mM (C) -0.2 -0.6 -0.6 -0.6 -0.1
carbon source Pectin from citrus peel (C) +0.4 -0.4 -1.3 -0.4 -0.3
carbon source D-Glucose (C) +0.6 -0.2 -1.9 -0.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.1 -0.8 -0.5 -0.5 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.0 -0.8 -0.7 +0.3 -0.5
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.6 +0.2 -0.7 -0.5 +0.3
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 +0.3 -0.5 -0.7 +0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.3 -0.1 -1.3 +0.1 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.4 -1.4 -0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.2 -0.7 +0.1 -0.3 -0.4
carbon source D-Xylose 2.5 mg/ml (C) -0.1 -0.1 -1.2 +0.3 +0.2
carbon source D-Glucose (C) +0.6 -0.3 -0.1 -0.8 -0.1
carbon source D-Galactose 20 mM (C) -0.7 -0.4 +0.6 +0.2 -0.2
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.5 +0.5 -0.4 -0.3 +0.3
carbon source D-Mannose 2.5 mg/ml (C) +0.2 +0.1 -1.2 +0.5 +0.1
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.2 +0.9 -0.2 -0.8 +0.2
carbon source D-Galacturonic Acid 20 mM (C) -0.4 +0.1 +0.9 +0.0 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.1 -0.5 +0.9 +0.3 -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.4 -0.0 -0.8 +0.5 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.2 -0.2 +1.0 -0.2 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.8 -0.3 +1.0 -0.4 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +0.3 -0.2 +0.7 +0.4 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.1 -0.1 +1.8 -0.2 -0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.5 +1.1 -0.3 -0.1
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) -0.1 +0.6 +0.6 -0.1 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.3 -0.4 +0.6 +0.9 -0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.8 +0.8 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.3 +0.0 +1.8 +0.1 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -0.1 +2.1 +0.4 -0.1
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HMPREF1058_RS08010
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HMPREF1058_RS08005
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HMPREF1058_RS07995
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HMPREF1058_RS07990
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