Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotidesHMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotidesHMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotidesHMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotides HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415 _RS07640 HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874 _RS07635 HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636 _RS07630 HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991 _RS07625 HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825 _RS07620
Group Condition HMPREF1058_RS07640 HMPREF1058_RS07635 HMPREF1058_RS07630 HMPREF1058_RS07625 HMPREF1058_RS07620
carbon source D-Glucose 20 mM (C) N.D. -3.2 -0.1 -1.7 -0.5
carbon source Sucrose 20 mM (C) N.D. -1.7 -0.0 -4.2 +0.6
carbon source D-Mannose 20 mM (C) N.D. -1.5 -0.2 -2.7 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day3 N.D. -4.6 -0.1 -0.3 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 N.D. -2.7 -0.1 -2.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. -3.1 -0.1 -1.7 +0.3
carbon source D-Glucose 20 mM (C) N.D. -1.7 +0.1 -3.7 +0.7
carbon source D-Mannose 20 mM (C) N.D. -1.9 -0.1 -2.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -4.1 -0.3 -0.2 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -4.4 -0.3 +0.1 +0.1
carbon source D-Galactose 20 mM (C) N.D. -1.3 -0.2 -2.9 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. -3.5 +0.1 -0.5 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day2 N.D. -3.6 +0.2 -0.9 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -4.1 -0.4 +0.2 +0.2
carbon source D-Mannose 20 mM (C) N.D. -2.4 +0.2 -1.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. -2.7 +0.4 -1.6 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 N.D. -3.3 +0.1 -0.9 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 N.D. -3.5 +0.2 -0.7 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. -2.4 +0.5 -1.7 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. -3.9 -0.2 +0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. -2.9 +0.5 -1.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. -4.0 -0.2 +0.3 +0.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.5 -0.7 -3.3 +2.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.8 +0.2 -2.8 +1.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -2.1 +0.3 -1.2 +1.0
carbon source D-Galactose (C) N.D. +1.3 +0.6 -3.2 -0.3
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. +1.2 +1.0 -3.1 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -1.1 +0.5 -1.3 +1.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.1 -0.2 -2.1 +4.2
carbon source D-Arabinose 20 mM (C) N.D. -0.1 +0.0 +4.8 +0.3
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