Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS06630 and HMPREF1058_RS06625 are separated by 35 nucleotidesHMPREF1058_RS06625 and HMPREF1058_RS06620 are separated by 113 nucleotidesHMPREF1058_RS06620 and HMPREF1058_RS06615 are separated by 175 nucleotidesHMPREF1058_RS06615 and HMPREF1058_RS06610 overlap by 1 nucleotides HMPREF1058_RS06630: HMPREF1058_RS06630 - glucose-1-phosphate thymidylyltransferase RfbA, at 433,105 to 433,992 _RS06630 HMPREF1058_RS06625: HMPREF1058_RS06625 - undecaprenyl-phosphate glucose phosphotransferase, at 434,028 to 435,431 _RS06625 HMPREF1058_RS06620: HMPREF1058_RS06620 - mannose-1-phosphate guanylyltransferase, at 435,545 to 436,609 _RS06620 HMPREF1058_RS06615: HMPREF1058_RS06615 - GDP-mannose 4,6-dehydratase, at 436,785 to 437,867 _RS06615 HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943 _RS06610
Group Condition HMPREF1058_RS06630 HMPREF1058_RS06625 HMPREF1058_RS06620 HMPREF1058_RS06615 HMPREF1058_RS06610
carbon source D-Galactose 20 mM (C) N.D. -2.2 N.D. -1.4 -3.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -4.0 N.D. -1.0 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -3.6 N.D. -1.1 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. -3.6 N.D. -0.1 -0.9
carbon source Sucrose 20 mM (C) N.D. -3.9 N.D. -0.1 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. -2.4 N.D. -0.8 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. -2.9 N.D. -0.4 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 N.D. -2.9 N.D. -0.7 -0.8
carbon source D-Galactose 20 mM (C) N.D. -1.3 N.D. -2.0 -1.1
carbon source D-Fructose 20 mM (C) N.D. -0.8 N.D. -1.5 -2.0
carbon source D-Galactose 20 mM (C) N.D. -1.5 N.D. -1.3 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 N.D. -2.6 N.D. -0.7 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. -2.7 N.D. -0.8 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 N.D. -3.2 N.D. -0.4 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 N.D. -3.4 N.D. +0.1 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. -2.1 N.D. -0.9 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. -2.6 N.D. -0.7 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. -3.4 N.D. -0.2 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -2.8 N.D. -1.0 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 N.D. -2.7 N.D. -0.5 -0.8
carbon source D-Maltose 20 mM (C) N.D. +0.4 N.D. -2.6 -1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. -3.7 N.D. +0.7 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 N.D. -3.4 N.D. +0.6 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. -2.8 N.D. +0.8 -0.5
carbon source Pectic galactan from potato 5mg/ml (C) N.D. +3.4 N.D. +0.2 +0.5
carbon source Pectic galactan from potato 5mg/ml (C) N.D. +3.8 N.D. -0.0 +0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. +3.8 N.D. +0.7 +0.2
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. -1.0 N.D. +3.5 +2.7
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. +3.9 N.D. +0.8 +0.5
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. -0.8 N.D. +3.8 +2.3
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