Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS06435 and HMPREF1058_RS06430 are separated by 43 nucleotidesHMPREF1058_RS06430 and HMPREF1058_RS06425 are separated by 156 nucleotidesHMPREF1058_RS06425 and HMPREF1058_RS06420 are separated by 154 nucleotidesHMPREF1058_RS06420 and HMPREF1058_RS06415 are separated by 39 nucleotides HMPREF1058_RS06435: HMPREF1058_RS06435 - D-2-hydroxyacid dehydrogenase, at 480,049 to 481,005 _RS06435 HMPREF1058_RS06430: HMPREF1058_RS06430 - C-GCAxxG-C-C family protein, at 481,049 to 481,552 _RS06430 HMPREF1058_RS06425: HMPREF1058_RS06425 - winged helix-turn-helix domain-containing protein, at 481,709 to 481,912 _RS06425 HMPREF1058_RS06420: HMPREF1058_RS06420 - type II toxin-antitoxin system HicA family toxin, at 482,067 to 482,255 _RS06420 HMPREF1058_RS06415: HMPREF1058_RS06415 - antitoxin HicB, at 482,295 to 482,687 _RS06415
Group Condition HMPREF1058_RS06435 HMPREF1058_RS06430 HMPREF1058_RS06425 HMPREF1058_RS06420 HMPREF1058_RS06415
carbon source D-Mannose 20 mM (C) -0.1 -2.3 -0.8 +0.1 N.D.
carbon source NAG 20 mM (C) -0.3 -1.7 -0.2 -0.6 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.2 -2.0 +0.9 -0.1 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 +1.4 -0.5 -1.3 N.D.
carbon source Arabinan from sugar beet 5mg/ml (C) -0.2 -1.6 +0.8 +0.3 N.D.
carbon source D-Galactose 20 mM (C) +0.0 -0.9 +1.3 -0.8 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 +0.1 +1.2 -1.4 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.4 -1.0 +1.1 +0.1 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.3 -0.5 -0.6 +1.3 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.5 -1.4 +0.7 +1.5 N.D.
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.2 -0.8 +1.0 +0.7 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.6 -0.7 +0.6 +1.7 N.D.
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.3 -0.7 +1.6 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.3 +0.2 -0.7 +1.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.5 +1.0 +0.9 -0.6 N.D.
carbon source D-Galactose (C) -0.4 +0.5 +1.9 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.2 +1.2 -0.6 +1.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 -0.1 +0.9 -0.4 +2.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.6 +1.1 +1.1 -0.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.4 +1.4 +0.3 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.6 +1.2 +0.3 +0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.7 +1.2 +0.8 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.8 +1.5 +0.4 +0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +0.3 +0.7 +0.5 +1.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.5 +1.5 +0.9 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.8 +1.4 +0.6 +0.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.7 +0.9 +0.5 +1.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.8 +1.8 +1.1 -0.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.4 +1.6 +1.1 +0.5 N.D.
carbon source Pectin from citrus peel (C) +0.1 +2.4 +0.6 +0.5 N.D.
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