Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS06375	HMPREF1058_RS06370	HMPREF1058_RS06365	HMPREF1058_RS06360	HMPREF1058_RS06355
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	+1.5	-0.0	-1.9	+0.2	-0.5
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-1.5	+0.2	-0.1	-0.0	+1.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	+1.7	+0.1	-0.9	+0.1	-0.1
carbon source	Pectin from citrus peel (C)	+2.0	-0.2	+0.1	-0.4	-0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	+1.6	+0.4	-0.6	+0.2	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9	+0.7	-0.3	+0.3	-0.4	+1.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	+1.5	+0.4	+0.1	+0.1	-0.5
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.6	+0.4	+0.2	+0.4	+1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5	+1.8	+0.3	-0.3	+0.2	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+2.1	-0.1	-0.1	+0.2	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+2.0	+0.2	-0.5	+0.1	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14	+0.7	-0.3	+0.4	-0.3	+1.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+1.6	-0.1	+0.7	+0.3	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+2.2	-0.0	+0.5	+0.0	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9	+0.9	-0.0	+0.4	-0.4	+1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+2.4	+0.1	-0.2	+0.1	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	+1.4	+0.4	+0.7	-0.1	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+1.5	+0.5	+0.7	-0.4	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+2.2	+0.3	+0.3	-0.1	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9	+1.1	-0.0	+0.8	-0.3	+1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	+2.0	+0.1	+0.9	-0.0	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7	+1.5	+0.1	+0.3	-0.0	+0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	+1.8	-0.2	-0.0	+0.2	+1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+1.8	+0.2	+0.6	+0.1	+0.2
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.9	+0.8	+0.8	+0.3	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+2.3	+0.4	+0.3	+0.3	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+2.3	+0.7	+0.3	-0.1	-0.1
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.9	+0.8	+0.8	+0.5	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	+2.0	-0.1	+1.0	+0.2	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9	+2.0	+0.6	+0.7	+0.0	+0.2