Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS06300 and HMPREF1058_RS06295 are separated by 263 nucleotidesHMPREF1058_RS06295 and HMPREF1058_RS06290 are separated by 220 nucleotidesHMPREF1058_RS06290 and HMPREF1058_RS06285 are separated by 58 nucleotidesHMPREF1058_RS06285 and HMPREF1058_RS06280 are separated by 170 nucleotides HMPREF1058_RS06300: HMPREF1058_RS06300 - YitT family protein, at 511,653 to 512,543 _RS06300 HMPREF1058_RS06295: HMPREF1058_RS06295 - aspartate ammonia-lyase, at 512,807 to 514,240 _RS06295 HMPREF1058_RS06290: HMPREF1058_RS06290 - lipocalin-like domain-containing protein, at 514,461 to 514,841 _RS06290 HMPREF1058_RS06285: HMPREF1058_RS06285 - hypothetical protein, at 514,900 to 516,387 _RS06285 HMPREF1058_RS06280: HMPREF1058_RS06280 - S9 family peptidase, at 516,558 to 518,789 _RS06280
Group Condition HMPREF1058_RS06300 HMPREF1058_RS06295 HMPREF1058_RS06290 HMPREF1058_RS06285 HMPREF1058_RS06280
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -1.7 -0.3 -4.4 -4.5 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.5 -0.2 -3.5 -3.2 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -1.5 -0.3 -3.2 -2.9 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.8 +0.0 -2.9 -2.7 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.7 -0.1 -2.7 -2.3 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -1.3 -0.4 -2.0 -2.1 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -1.0 -0.2 -2.1 -1.8 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -1.0 -0.3 -1.5 -1.9 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -1.0 +0.0 -1.7 -2.0 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -1.0 -0.2 -1.8 -1.7 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.3 +0.0 -2.3 -1.9 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -0.5 -0.1 -1.9 -1.8 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 -0.7 -0.1 -1.7 -1.5 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -1.4 -0.3 -1.2 -1.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 -0.8 -0.2 -1.6 -1.4 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 -1.1 -0.1 -1.1 -1.2 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 -1.0 -0.1 -1.1 -0.8 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day4 -1.0 -0.2 -1.0 -0.9 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -1.2 -0.2 -0.8 -0.8 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -2.8 -0.2 -0.4 +0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 -0.6 -0.2 -1.3 -0.8 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -1.4 -0.2 -0.7 -0.6 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -2.4 -0.1 -0.4 +0.1 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -1.0 -1.4 -0.3 -0.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 -1.2 -0.4 -0.5 -0.4 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4 -0.8 -0.2 -0.8 -0.6 -0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -1.0 -1.4 +0.1 -0.2 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -1.2 +0.3 -0.8 -0.3 -0.4
carbon source D-Galactose 20 mM (C) -1.4 -1.3 +0.3 +0.1 +0.1
carbon source Arabinan from sugar beet 5mg/ml (C) -0.6 -1.7 -0.1 +0.2 +0.2
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HMPREF1058_RS06300
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HMPREF1058_RS06295
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HMPREF1058_RS06285
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HMPREF1058_RS06280
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