Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS06220 and HMPREF1058_RS0119805 are separated by 324 nucleotidesHMPREF1058_RS0119805 and HMPREF1058_RS06215 overlap by 11 nucleotidesHMPREF1058_RS06215 and HMPREF1058_RS06210 are separated by 556 nucleotidesHMPREF1058_RS06210 and HMPREF1058_RS06205 are separated by 48 nucleotides HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560 _RS06220 HMPREF1058_RS0119805: HMPREF1058_RS0119805 - lysine exporter LysO family protein, at 533,885 to 534,505 _RS0119805 HMPREF1058_RS06215: HMPREF1058_RS06215 - LysO family transporter, at 534,495 to 534,782 _RS06215 HMPREF1058_RS06210: HMPREF1058_RS06210 - antibiotic biosynthesis monooxygenase, at 535,339 to 535,614 _RS06210 HMPREF1058_RS06205: HMPREF1058_RS06205 - glycosyltransferase, at 535,663 to 536,820 _RS06205
Group Condition HMPREF1058_RS06220 HMPREF1058_RS0119805 HMPREF1058_RS06215 HMPREF1058_RS06210 HMPREF1058_RS06205
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. -0.4 +0.3 -0.8 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 N.D. -0.4 -0.3 -0.5 +0.9
carbon source Sucrose 20 mM (C) N.D. +0.1 +0.4 -1.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 N.D. -0.3 +0.3 -0.7 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 N.D. -0.5 +0.7 -0.7 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 N.D. -0.4 +0.5 -0.5 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. -0.1 +0.5 -0.8 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) N.D. +0.3 +0.5 -1.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 N.D. +0.1 +0.3 -0.7 +0.5
carbon source D-Galactose 2.5 mg/ml (C) N.D. +0.6 +0.3 -0.8 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.3 +0.6 -1.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 N.D. +0.0 +0.6 -0.7 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 N.D. -0.2 +0.5 -0.4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 N.D. -0.5 +0.4 +0.4 +0.3
carbon source Amylose from potato 5 mg/ml (C) N.D. +0.1 +0.1 +1.0 -0.5
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. +0.4 +0.8 -0.2 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 N.D. -0.1 +0.8 -0.6 +0.8
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) N.D. +0.8 +0.5 -0.1 -0.2
carbon source D-Mannose 2.5 mg/ml (C) N.D. +0.8 +0.6 -0.2 -0.1
carbon source D-Glucose 5 mg/ml (C) N.D. +0.7 +0.7 -0.1 -0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. +0.6 +0.7 +0.2 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +0.5 +1.0 -0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 N.D. -0.4 +0.6 +0.3 +0.9
carbon source D-Mannose 2.5 mg/ml (C) N.D. +0.8 +0.7 -0.2 +0.2
carbon source D-Galactose 2.5 mg/ml (C) N.D. +0.8 +0.5 +0.1 +0.2
carbon source D-Glucose 5 mg/ml (C) N.D. +0.6 +0.7 +0.3 +0.1
carbon source Pectin from citrus peel (C) N.D. -0.0 +0.7 +0.7 +0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. +0.6 +0.6 +0.2 +0.3
carbon source D-Glucose 2.5 mg/ml (C) N.D. +0.7 +0.6 +0.3 +0.1
carbon source Polygalacturonic 5 mg/ml (C) N.D. +0.2 +0.8 +1.0 +0.0
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HMPREF1058_RS06220
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HMPREF1058_RS0119805
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HMPREF1058_RS06210
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HMPREF1058_RS06205
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