Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS06035	HMPREF1058_RS06030	HMPREF1058_RS06025	HMPREF1058_RS06020	HMPREF1058_RS06015
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-1.3	-0.3	+0.3	-0.8	-0.4
carbon source	Polygalacturonic 5 mg/ml (C)	-0.8	-0.5	-0.1	-0.5	-0.3
carbon source	Red Arabinan from sugar-beet; filtered 5 mg/ml (C)	-1.2	-0.1	-0.1	-0.4	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	-0.1	-0.4	-1.5	+0.0	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	-0.5	-0.0	-0.9	-0.3	+0.3
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	+0.4	-0.5	-0.5	-0.7	-0.0
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	-0.2	+0.5	-0.5	-0.4
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	+0.8	-0.8	-0.3	-0.1	-0.2
carbon source	Arabinan from sugar beet 5mg/ml (C)	+0.9	-0.4	-0.3	-0.4	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	+0.7	-0.3	-1.1	-0.0	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+0.6	-0.2	-1.1	-0.1	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.4	+0.1	-1.2	-0.0	+0.3
carbon source	beta-Cyclodextrin 5 mg/ml (C)	+0.9	-0.2	-0.3	-0.4	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.6	+0.1	-1.5	+0.2	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	+0.4	-0.3	-0.7	+0.2	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	+0.2	-0.5	-0.7	+0.5	+0.6
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+1.2	-0.4	-0.0	-0.4	-0.3
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	+0.8	-0.3	+0.4	-0.5	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+0.6	-0.2	-0.9	+0.1	+0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9	+1.0	-0.2	-0.7	+0.0	+0.2
carbon source	NAG (C)	+0.8	+0.1	+0.3	-0.6	-0.3
carbon source	Arabinan from sugar beet 5mg/ml (C)	+1.1	-0.4	+0.0	-0.2	-0.3
carbon source	Pectic galactan from potato 5mg/ml (C)	+1.3	-0.3	-0.3	-0.1	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9	+0.7	+0.4	-0.8	+0.1	+0.1
carbon source	D-Maltose 20 mM (C)	+1.1	-0.1	+0.2	-0.5	-0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	+0.9	+0.1	-0.5	-0.3	+0.4
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.5	-0.5	+1.1	+0.1	-0.2
carbon source	Amylose from potato 5 mg/ml (C)	+0.9	-0.2	+0.3	-0.3	+0.3
carbon source	beta-Cyclodextrin 5 mg/ml (C)	+1.8	-0.5	+0.4	-0.2	-0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+1.2	+0.2	-1.0	+0.4	+0.9