Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05960 and HMPREF1058_RS05955 are separated by 8 nucleotidesHMPREF1058_RS05955 and HMPREF1058_RS05950 overlap by 4 nucleotidesHMPREF1058_RS05950 and HMPREF1058_RS05945 overlap by 4 nucleotidesHMPREF1058_RS05945 and HMPREF1058_RS05940 are separated by 4 nucleotides HMPREF1058_RS05960: HMPREF1058_RS05960 - YjbQ family protein, at 41,689 to 42,102 _RS05960 HMPREF1058_RS05955: HMPREF1058_RS05955 - hypothetical protein, at 42,111 to 43,313 _RS05955 HMPREF1058_RS05950: HMPREF1058_RS05950 - ATP-binding cassette domain-containing protein, at 43,310 to 43,954 _RS05950 HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483 _RS05945 HMPREF1058_RS05940: HMPREF1058_RS05940 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 45,488 to 46,189 _RS05940
Group Condition HMPREF1058_RS05960 HMPREF1058_RS05955 HMPREF1058_RS05950 HMPREF1058_RS05945 HMPREF1058_RS05940
carbon source (+)-Arabinogalactan 5 mg/ml (C) +1.0 -0.9 -0.7 -0.9 -1.0
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +1.1 -1.0 +0.0 -0.4 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -0.2 +0.8 +0.8 +0.7 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day4 -0.0 +0.9 +0.6 +0.8 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.4 +0.5 +0.8 +0.6 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day4 +0.1 +0.9 +0.7 +0.7 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 +0.5 +0.8 +0.7 +0.6 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.4 +0.6 +0.8 +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 +0.1 +0.8 +1.0 +0.6 +0.6
carbon source D-Glucose (C) +0.1 +0.9 +0.4 +1.1 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.7 +0.9 +1.1 +1.1 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.2 +0.9 +1.0 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.3 +0.7 +1.1 +0.6 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.0 +1.0 +1.2 +1.0 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.1 +1.3 +0.8 +1.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 +0.3 +1.2 +0.9 +1.0 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 +0.1 +1.2 +0.9 +1.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +0.3 +1.1 +0.9 +1.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 +0.3 +1.2 +0.9 +1.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +0.2 +1.5 +1.0 +1.1 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.1 +1.5 +1.1 +1.3 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.5 +0.7 +1.1 +0.7 +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.1 +1.8 +1.1 +1.5 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.0 +1.6 +1.1 +1.2 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.3 +1.2 +1.4 +0.9 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.2 +1.3 +1.1 +1.2 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +0.1 +1.6 +1.1 +1.3 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.5 +1.6 +1.4 +1.5 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.6 +1.7 +1.6 +1.6 +1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +0.6 +1.9 +1.6 +1.7 +1.1
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HMPREF1058_RS05960
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HMPREF1058_RS05940
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