Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05890 and HMPREF1058_RS05885 overlap by 11 nucleotidesHMPREF1058_RS05885 and HMPREF1058_RS05880 overlap by 4 nucleotidesHMPREF1058_RS05880 and HMPREF1058_RS05875 are separated by 104 nucleotidesHMPREF1058_RS05875 and HMPREF1058_RS05870 are separated by 16 nucleotides HMPREF1058_RS05890: HMPREF1058_RS05890 - class I SAM-dependent rRNA methyltransferase, at 55,218 to 56,402 _RS05890 HMPREF1058_RS05885: HMPREF1058_RS05885 - 3'-5' exonuclease domain-containing protein 2, at 56,392 to 57,042 _RS05885 HMPREF1058_RS05880: HMPREF1058_RS05880 - DUF5063 domain-containing protein, at 57,039 to 57,602 _RS05880 HMPREF1058_RS05875: HMPREF1058_RS05875 - DNA translocase FtsK, at 57,707 to 60,172 _RS05875 HMPREF1058_RS05870: HMPREF1058_RS05870 - outer-membrane lipoprotein carrier protein LolA, at 60,189 to 60,803 _RS05870
Group Condition HMPREF1058_RS05890 HMPREF1058_RS05885 HMPREF1058_RS05880 HMPREF1058_RS05875 HMPREF1058_RS05870
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.2 -1.3 -2.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.2 -1.4 -1.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.3 -1.5 -1.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.3 -1.5 -1.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 -0.2 -1.0 -1.9 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 -0.2 -0.9 -1.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.3 -1.4 -0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3 -0.3 -1.4 -0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.1 -1.0 -1.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -0.5 -0.7 -1.2 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 -0.3 -0.6 -1.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4 -0.2 -1.4 -0.8 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -0.4 -0.9 -1.0 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.1 -1.2 -1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.3 -1.1 -0.9 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 +0.2 -2.0 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.7 -1.7 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 +0.4 -2.2 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.2 +0.5 -1.8 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) +1.0 -0.2 -1.7 N.D. N.D.
carbon source D-Glucose (C) +0.5 +0.5 -1.6 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +1.0 -0.2 -1.2 N.D. N.D.
carbon source D-Glucose (C) +0.5 +1.0 -1.4 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.6 +1.8 +0.2 N.D. N.D.
carbon source D-Mannose (C) +1.1 +1.9 +0.3 N.D. N.D.
carbon source D-Mannose (C) +1.0 +2.0 +0.7 N.D. N.D.
carbon source Polygalacturonic 5 mg/ml (C) +0.7 +0.6 +2.4 N.D. N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +2.7 +1.2 N.D. N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +0.9 +2.5 +1.0 N.D. N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +0.8 +2.2 +1.4 N.D. N.D.
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