Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05810 and HMPREF1058_RS05805 are separated by 182 nucleotidesHMPREF1058_RS05805 and HMPREF1058_RS05800 are separated by 410 nucleotidesHMPREF1058_RS05800 and HMPREF1058_RS05795 overlap by 54 nucleotidesHMPREF1058_RS05795 and HMPREF1058_RS05790 are separated by 1199 nucleotides HMPREF1058_RS05810: HMPREF1058_RS05810 - MFS transporter, at 73,123 to 74,340 _RS05810 HMPREF1058_RS05805: HMPREF1058_RS05805 - bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase, at 74,523 to 76,820 _RS05805 HMPREF1058_RS05800: HMPREF1058_RS05800 - DUF4858 domain-containing protein, at 77,231 to 78,001 _RS05800 HMPREF1058_RS05795: HMPREF1058_RS05795 - DMT family protein, at 77,948 to 78,322 _RS05795 HMPREF1058_RS05790: HMPREF1058_RS05790 - hypothetical protein, at 79,522 to 79,743 _RS05790
Group Condition HMPREF1058_RS05810 HMPREF1058_RS05805 HMPREF1058_RS05800 HMPREF1058_RS05795 HMPREF1058_RS05790
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.3 -0.9 -2.9 +0.5 -3.7
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -0.2 -3.7 +0.2 -0.3 -3.1
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.0 -3.4 -0.3 -0.5 -1.9
carbon source Arabinan from sugar beet 5mg/ml (C) +0.1 -4.3 +0.5 -0.7 -1.6
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.2 -3.7 +0.2 -0.5 -1.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -1.1 -0.6 -1.9 -1.7
carbon source Polygalacturonic ultrapure 5mg/ml (C) -0.0 -3.4 +0.4 -1.2 -0.6
carbon source Arabinan from sugar beet 5mg/ml (C) +0.3 -3.8 -0.1 -0.3 -0.8
carbon source D-Raffinose 20 mM (C) +0.1 -1.8 +0.2 -0.6 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.7 -2.5 +0.8 +0.8 -2.9
carbon source Polygalacturonic ultrapure 5mg/ml (C) +0.1 -3.3 +0.2 -0.4 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -0.3 -1.8 -0.0 +0.5 -2.7
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.2 -3.3 -0.4 +0.7 -1.4
carbon source Pectic galactan from potato 5mg/ml (C) +0.2 -3.4 -0.3 +0.2 -0.9
carbon source D-Galacturonic Acid 20 mM (C) -0.3 -2.6 +0.6 +0.0 -1.8
carbon source Polygalacturonic 5 mg/ml (C) +0.1 -2.7 +0.5 -0.8 -1.1
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.3 -3.7 +0.4 +0.3 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.7 -2.4 -0.2 +0.8 -1.4
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.1 -2.7 +0.5 -0.3 -1.5
carbon source a-Cyclodextrin (C) -0.1 -4.5 +0.5 +0.2 +0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.4 -3.6 -0.2 +0.5 +0.5
carbon source a-Cyclodextrin (C) -0.1 -4.1 +0.8 +0.1 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 -0.4 -1.8 +0.3 +1.1 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -2.6 -2.3 +0.0 +1.4 +1.7
carbon source D-Galactose (C) -0.7 -2.2 -1.1 +0.0 +2.2
carbon source D-Galactose (C) -0.5 -1.9 -0.7 -0.2 +1.6
carbon source NAG (C) +0.0 -2.8 +0.5 -1.1 +2.0
carbon source Fructose-6-phosphate (C) +0.1 -2.9 +0.4 +0.4 +1.2
carbon source NAG (C) +0.3 -2.6 +0.5 +0.8 +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -1.6 +1.0 -0.1 +0.6 +2.5
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