Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05800 and HMPREF1058_RS05795 overlap by 54 nucleotidesHMPREF1058_RS05795 and HMPREF1058_RS05790 are separated by 1199 nucleotidesHMPREF1058_RS05790 and HMPREF1058_RS21630 are separated by 172 nucleotidesHMPREF1058_RS21630 and HMPREF1058_RS05785 are separated by 344 nucleotides HMPREF1058_RS05800: HMPREF1058_RS05800 - DUF4858 domain-containing protein, at 77,231 to 78,001 _RS05800 HMPREF1058_RS05795: HMPREF1058_RS05795 - DMT family protein, at 77,948 to 78,322 _RS05795 HMPREF1058_RS05790: HMPREF1058_RS05790 - hypothetical protein, at 79,522 to 79,743 _RS05790 HMPREF1058_RS21630: HMPREF1058_RS21630 - hypothetical protein, at 79,916 to 80,092 _RS21630 HMPREF1058_RS05785: HMPREF1058_RS05785 - adenine nucleotide alpha hydrolase family protein, at 80,437 to 81,192 _RS05785
Group Condition HMPREF1058_RS05800 HMPREF1058_RS05795 HMPREF1058_RS05790 HMPREF1058_RS21630 HMPREF1058_RS05785
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -2.9 +0.5 -3.7 +0.2 -0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 -1.9 -1.7 -0.2 +0.6
carbon source D-Raffinose 20 mM (C) +0.2 -0.1 -3.5 +0.2 -0.2
carbon source D-Raffinose 20 mM (C) +0.2 -0.6 -2.7 -0.1 +0.0
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.2 -0.3 -3.1 +0.3 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.3 -0.5 -1.9 +0.4 -0.4
carbon source D-Fructose 20 mM (C) +0.2 -0.2 -2.7 +0.3 -0.4
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.5 -0.6 -2.5 +0.1 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.4 +0.7 -1.4 -0.9 -0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.3 -0.6 -1.7 +0.9 -0.0
carbon source Amylose from potato 5 mg/ml (C) -0.7 -1.2 +0.6 -1.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -0.0 +0.5 -2.7 +0.4 +0.1
carbon source L-Arabinose 20 mM (C) +0.1 +0.2 -2.5 +0.3 +0.3
carbon source Arabinan from sugar beet 5mg/ml (C) +0.5 -0.7 -1.6 +0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.2 +0.9 -1.7 +0.1 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.3 -0.5 -1.3 +1.1 +0.1
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.5 -0.3 -1.5 +0.5 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.8 +0.8 -2.9 +0.9 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.3 +1.1 -1.3 +0.8 +0.1
carbon source D-Mannose (C) -0.6 +0.3 +2.0 -0.3 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.2 +1.9 -1.0 +0.4 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.3 +1.1 -1.3 +0.9 +0.1
carbon source NAG (C) +0.5 -1.1 +2.0 -0.2 +0.1
carbon source Galactose 1-phosphate dipotassium salt (C) -0.1 -0.8 +2.4 -0.0 -0.2
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +1.1 -1.2 +0.5 +0.1 +0.9
carbon source Galactose 1-phosphate dipotassium salt (C) +0.4 +0.3 +2.0 -0.7 -0.2
carbon source D-Galactose (C) -1.1 +0.0 +2.2 +0.7 +0.2
carbon source D-Mannose 2.5 mg/ml (C) +0.7 +0.7 +1.4 +0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.1 +0.6 +2.5 +0.8 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.0 +1.4 +1.7 +1.0 +0.7
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HMPREF1058_RS05800
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HMPREF1058_RS05795
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HMPREF1058_RS21630
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HMPREF1058_RS05785
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