Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS05725	HMPREF1058_RS05720	HMPREF1058_RS05715	HMPREF1058_RS05710	HMPREF1058_RS0119825
carbon source	D-Glucosamine Hydrochloride 20 mM (C)	-0.9	+0.0	-0.1	+0.1	-2.1
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	+0.0	+0.0	-0.3	+0.1	-2.1
carbon source	D-Galactose 20 mM (C)	-1.7	-0.5	+0.2	+0.1	-0.2
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	-0.7	-0.0	+0.2	+0.2	-1.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	-1.7	+0.6	-0.2	-0.0	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	-2.6	+0.5	+0.6	+0.3	-0.3
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	-0.0	+0.8	-0.5	+0.1	-1.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6	-2.5	+0.5	+0.5	+0.5	-0.2
carbon source	Pectin from citrus peel (C)	+0.2	+1.2	-0.6	-0.3	-1.6
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.4	+0.7	-0.8	+0.2	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	-1.7	+0.8	-0.2	+0.1	+0.2
carbon source	Polygalacturonic 5 mg/ml (C)	+0.7	+0.3	+0.0	-0.3	-1.5
carbon source	D-Raffinose 2.5 mg/ml (C)	+0.6	+0.1	-0.5	+0.1	-1.1
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	-0.8	+1.1	-0.3	-0.1	-0.7
carbon source	polygalacturonic; autoclaved 2.5 mg/ml (C)	+1.6	-0.2	-0.1	-0.1	-1.5
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	-0.1	+1.0	+0.2	-0.2	-1.3
carbon source	Pectin from citrus peel (C)	-0.6	+1.4	+0.0	-0.2	-0.9
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	+0.2	+0.9	+0.2	-0.2	-1.1
carbon source	Pectic galactan from potato 5mg/ml (C)	+0.9	+0.3	-0.5	+0.3	-0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7	+0.8	+0.6	-0.8	+0.1	-0.4
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.8	+0.9	-0.4	+0.1	-1.0
carbon source	(+)-Arabinogalactan; filtered 2.5 mg/ml (C)	+0.5	+0.9	-0.0	+0.1	-1.0
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.9	+0.9	-0.4	-0.3	-0.5
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.9	+1.1	-0.2	-0.1	-0.9
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.9	+0.7	-0.5	+0.6	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.9	+1.2	-0.5	+0.0	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	+0.6	+1.3	-0.4	+0.2	-0.2
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+2.1	-0.0	-0.3	+0.2	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	-0.1	+1.2	+0.8	-0.0	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	+1.3	+1.1	+0.1	-0.1	+0.2