Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21490 and HMPREF1058_RS0119835 are separated by 449 nucleotidesHMPREF1058_RS0119835 and HMPREF1058_RS05695 are separated by 3 nucleotidesHMPREF1058_RS05695 and HMPREF1058_RS05690 are separated by 142 nucleotidesHMPREF1058_RS05690 and HMPREF1058_RS20935 are separated by 374 nucleotides HMPREF1058_RS21490: HMPREF1058_RS21490 - hypothetical protein, at 101,539 to 101,682 _RS21490 HMPREF1058_RS0119835: HMPREF1058_RS0119835 - type II toxin-antitoxin system HipA family toxin, at 102,132 to 103,395 _RS0119835 HMPREF1058_RS05695: HMPREF1058_RS05695 - helix-turn-helix domain-containing protein, at 103,399 to 103,719 _RS05695 HMPREF1058_RS05690: HMPREF1058_RS05690 - hypothetical protein, at 103,862 to 104,137 _RS05690 HMPREF1058_RS20935: HMPREF1058_RS20935 - helix-turn-helix domain-containing protein, at 104,512 to 105,448 _RS20935
Group Condition HMPREF1058_RS21490 HMPREF1058_RS0119835 HMPREF1058_RS05695 HMPREF1058_RS05690 HMPREF1058_RS20935
carbon source Dextran 5 mg/ml (C) -0.8 -0.1 -0.9 -1.0 +0.0
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.6 -0.7 +0.6 -0.9 -0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.9 +0.2 +0.8 -0.5 -0.6
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.7 -0.4 +1.2 -0.7 -0.4
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.9 -0.5 -0.2 -0.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.8 -0.0 +0.3 -1.3 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 +0.9 -0.1 -0.3 -0.4 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.9 -0.3 -0.0 -1.3 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.6 +0.4 +1.2 -0.4 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -1.0 +0.4 +0.8 +0.4 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.8 +0.0 +0.7 -0.2 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +1.0 -0.0 +0.6 -0.0 -1.1
carbon source Amylose from potato 5 mg/ml (C) +0.9 -0.2 -1.0 +0.7 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.8 +0.6 +0.6 -0.8 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -0.5 +0.4 +1.3 -0.8 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.8 -0.1 +1.2 -1.6 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.4 +0.3 +1.0 -0.4 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.2 +0.9 +0.7 +0.4 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 +0.4 +0.6 +1.5 -1.1 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.8 +0.3 +1.6 -0.9 -0.3
carbon source D-Galactose (C) +0.5 +0.3 +0.7 +0.6 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.4 +0.2 +1.6 -0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.2 +0.5 +1.4 -0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.4 +0.3 +1.4 -0.0 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +1.2 +0.2 +0.3 +0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.2 +0.7 +0.6 -0.1 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.7 +0.6 +1.1 +0.5 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +1.6 +0.4 +0.9 +0.3 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +1.2 +0.4 +1.2 +0.9 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +1.4 +0.4 +1.2 +0.8 -0.1
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HMPREF1058_RS21490
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HMPREF1058_RS0119835
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HMPREF1058_RS05690
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HMPREF1058_RS20935
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