Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05690 and HMPREF1058_RS20935 are separated by 374 nucleotidesHMPREF1058_RS20935 and HMPREF1058_RS05675 are separated by 137 nucleotidesHMPREF1058_RS05675 and HMPREF1058_RS05670 are separated by 109 nucleotidesHMPREF1058_RS05670 and HMPREF1058_RS05665 are separated by 11 nucleotides HMPREF1058_RS05690: HMPREF1058_RS05690 - hypothetical protein, at 103,862 to 104,137 _RS05690 HMPREF1058_RS20935: HMPREF1058_RS20935 - helix-turn-helix domain-containing protein, at 104,512 to 105,448 _RS20935 HMPREF1058_RS05675: HMPREF1058_RS05675 - site-specific integrase, at 105,586 to 106,458 _RS05675 HMPREF1058_RS05670: HMPREF1058_RS05670 - IS21-like element helper ATPase IstB, at 106,568 to 107,353 _RS05670 HMPREF1058_RS05665: HMPREF1058_RS05665 - IS21 family transposase, at 107,365 to 108,930 _RS05665
Group Condition HMPREF1058_RS05690 HMPREF1058_RS20935 HMPREF1058_RS05675 HMPREF1058_RS05670 HMPREF1058_RS05665
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -1.3 -0.7 -1.3 N.D. N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.9 -0.3 -0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.2 -1.0 -0.7 N.D. N.D.
carbon source Dextran 5 mg/ml (C) -1.0 +0.0 -0.9 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -0.0 -1.1 -0.7 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.8 -0.7 -0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.8 -0.6 -0.4 N.D. N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.9 -0.2 -0.6 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.4 -0.6 -0.5 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.0 -0.5 -1.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.3 -0.7 -0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -1.3 +0.1 -0.2 N.D. N.D.
carbon source Pectic galactan from potato 5mg/ml (C) -1.3 +0.0 -0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.9 -0.3 -0.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.4 -0.8 -0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -1.6 +0.5 -0.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -1.1 +0.1 -0.3 N.D. N.D.
carbon source Sucrose 20 mM (C) -0.4 -0.3 -0.6 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.4 -0.5 -0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 -0.6 +0.2 -0.5 N.D. N.D.
carbon source Dextran 5 mg/ml (C) +0.1 +0.1 -1.1 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +0.4 -0.4 -0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.6 +0.4 -0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.2 +0.5 -0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.8 -0.1 -0.7 N.D. N.D.
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.6 +0.4 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.9 -0.1 -0.4 N.D. N.D.
carbon source Polygalacturonic 5 mg/ml (C) -0.4 +0.2 +0.7 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 +0.4 -0.4 N.D. N.D.
carbon source Amylose from potato 5 mg/ml (C) +0.7 +0.1 +0.4 N.D. N.D.
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