Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS0119845 and HMPREF1058_RS05625 are separated by 363 nucleotidesHMPREF1058_RS05625 and HMPREF1058_RS05620 overlap by 8 nucleotidesHMPREF1058_RS05620 and HMPREF1058_RS05615 overlap by 4 nucleotidesHMPREF1058_RS05615 and HMPREF1058_RS05610 are separated by 405 nucleotides HMPREF1058_RS0119845: HMPREF1058_RS0119845 - hypothetical protein, at 116,920 to 117,195 _RS0119845 HMPREF1058_RS05625: HMPREF1058_RS05625 - HipA domain-containing protein, at 117,559 to 118,500 _RS05625 HMPREF1058_RS05620: HMPREF1058_RS05620 - HipA N-terminal domain-containing protein, at 118,493 to 118,831 _RS05620 HMPREF1058_RS05615: HMPREF1058_RS05615 - helix-turn-helix transcriptional regulator, at 118,828 to 119,034 _RS05615 HMPREF1058_RS05610: HMPREF1058_RS05610 - DUF2971 domain-containing protein, at 119,440 to 120,447 _RS05610
Group Condition HMPREF1058_RS0119845 HMPREF1058_RS05625 HMPREF1058_RS05620 HMPREF1058_RS05615 HMPREF1058_RS05610
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.4 +0.2 -0.6 -3.8 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +0.2 +0.4 -0.6 -3.9 -0.6
carbon source Amylose from potato 5 mg/ml (C) -0.2 +0.2 -0.4 -4.3 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -0.5 +0.3 -0.3 -3.7 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.1 +0.1 -0.4 -3.8 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.2 +0.3 -0.3 -3.6 -0.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.2 -0.2 +0.5 -3.9 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.1 +0.3 -0.1 -3.8 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.4 +0.1 +0.0 -3.0 -0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 -0.1 -1.9 -0.6 -0.9
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.1 +0.1 +0.2 -3.8 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.0 +0.6 +0.4 -4.0 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.1 +0.4 -0.1 -3.0 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.2 +0.5 +0.5 -4.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.5 +0.3 +0.2 -3.8 -0.1
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.0 -0.2 +0.9 -3.6 -0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.1 +0.3 +0.2 -2.5 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.2 +0.1 -1.0 -2.0 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.2 +0.6 +0.5 -3.7 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.9 +0.3 +0.6 -2.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.3 +0.4 +0.6 -3.0 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 -0.4 +0.4 +1.0 -2.6 -0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.6 +0.1 +0.7 -1.0 +0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.1 -0.6 +0.1 -1.6 -0.5
carbon source D-Mannose 20 mM (C) +0.2 -0.1 +0.9 -2.5 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.6 +0.4 +0.4 -2.4 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.3 +0.7 +1.2 -3.1 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -2.4 +0.1 +0.1 +1.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.4 +0.5 +1.3 -2.6 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 +0.3 +1.3 -1.8 -0.4
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HMPREF1058_RS0119845
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