Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05535 and HMPREF1058_RS05530 are separated by 13 nucleotidesHMPREF1058_RS05530 and HMPREF1058_RS05525 are separated by 12 nucleotidesHMPREF1058_RS05525 and HMPREF1058_RS05520 are separated by 96 nucleotidesHMPREF1058_RS05520 and HMPREF1058_RS20945 are separated by 10 nucleotides HMPREF1058_RS05535: HMPREF1058_RS05535 - DEAD/DEAH box helicase family protein, at 138,445 to 141,297 _RS05535 HMPREF1058_RS05530: HMPREF1058_RS05530 - site-specific DNA-methyltransferase, at 141,311 to 143,212 _RS05530 HMPREF1058_RS05525: HMPREF1058_RS05525 - toll/interleukin-1 receptor domain-containing protein, at 143,225 to 144,151 _RS05525 HMPREF1058_RS05520: HMPREF1058_RS05520 - DUF4357 domain-containing protein, at 144,248 to 144,427 _RS05520 HMPREF1058_RS20945: HMPREF1058_RS20945 - hypothetical protein, at 144,438 to 145,733 _RS20945
Group Condition HMPREF1058_RS05535 HMPREF1058_RS05530 HMPREF1058_RS05525 HMPREF1058_RS05520 HMPREF1058_RS20945
carbon source D-Mannose (C) -0.3 -0.4 -0.2 -4.1 -0.1
carbon source Amylose from potato 5 mg/ml (C) -0.7 -0.7 -0.1 -3.7 +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 +0.2 -0.4 -4.1 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.4 +0.7 -0.1 -4.1 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) +0.0 +0.2 -0.4 -4.1 +0.0
carbon source D-Mannose 20 mM (C) -0.2 -0.3 -0.3 -3.0 -0.2
carbon source Sucrose 20 mM (C) -0.6 +0.4 +0.3 -4.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.7 -0.9 +0.4 -3.2 +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.6 +0.3 +0.2 -3.2 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.6 +0.5 -0.0 -3.3 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 -0.5 +0.0 +0.0 -3.1 +0.2
carbon source D-Arabinose 2.5 mg/ml (C) -0.0 +0.0 +0.1 -3.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.5 +0.3 +0.0 -3.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.1 +0.3 -0.0 -3.2 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 -0.2 -0.3 +0.5 -3.2 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.4 +0.4 -0.0 -2.9 -0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.1 +0.2 +0.0 -3.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -0.3 +0.2 +0.4 -3.3 +0.2
carbon source D-Galactose 20 mM (C) -0.4 -0.5 -0.0 -2.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.9 +0.5 -0.1 -2.2 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -0.5 +0.3 +0.3 -2.4 -0.0
carbon source NAG 2.5 mg/ml (C) +0.2 +0.1 -0.4 -2.1 +0.1
carbon source L-Fucose 2.5 mg/ml (C) +0.2 +0.3 -0.2 -2.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.2 +0.0 +0.6 -2.5 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.3 +0.5 +0.3 -2.3 +0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 -0.1 +0.1 -2.2 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.0 +0.5 +0.4 -1.9 +0.1
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.3 +1.3 +0.0 -1.9 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.2 +0.4 +0.9 -1.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.1 +0.5 -0.3 +2.0 +0.1
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HMPREF1058_RS20945
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