Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS05015 and HMPREF1058_RS05010 are separated by 147 nucleotidesHMPREF1058_RS05010 and HMPREF1058_RS05005 are separated by 133 nucleotidesHMPREF1058_RS05005 and HMPREF1058_RS05000 are separated by 77 nucleotidesHMPREF1058_RS05000 and HMPREF1058_RS04995 are separated by 91 nucleotides HMPREF1058_RS05015: HMPREF1058_RS05015 - twin-arginine translocase TatA/TatE family subunit, at 268,207 to 268,410 _RS05015 HMPREF1058_RS05010: HMPREF1058_RS05010 - hypothetical protein, at 268,558 to 269,067 _RS05010 HMPREF1058_RS05005: HMPREF1058_RS05005 - hypothetical protein, at 269,201 to 269,683 _RS05005 HMPREF1058_RS05000: HMPREF1058_RS05000 - DUF4010 domain-containing protein, at 269,761 to 271,050 _RS05000 HMPREF1058_RS04995: HMPREF1058_RS04995 - putative sulfate exporter family transporter, at 271,142 to 272,128 _RS04995
Group Condition HMPREF1058_RS05015 HMPREF1058_RS05010 HMPREF1058_RS05005 HMPREF1058_RS05000 HMPREF1058_RS04995
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.1 +0.1 -0.4 +0.1 -4.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.1 +0.2 -0.9 +0.1 -3.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +0.2 +0.2 -0.4 +0.1 -3.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 -0.1 -1.0 -0.1 -2.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.2 -0.4 -0.5 +0.1 -1.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.8 +0.2 +0.4 +0.0 -2.4
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 -0.6 -1.5 +0.5 -0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -1.5 +0.1 -0.1 +0.1 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -1.4 +0.2 -0.6 +0.1 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.9 +0.2 -0.9 -0.0 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -0.6 +0.4 -0.9 +0.1 -1.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +1.3 +0.4 -0.7 +0.1 -3.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.3 +0.3 +0.3 +0.1 -2.8
carbon source Dextran 5 mg/ml (C) +0.6 -0.0 -2.4 +0.1 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.5 -0.1 -0.4 +0.2 -1.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +0.3 +0.4 -1.1 +0.1 -1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 -0.8 +0.0 -1.8 +0.2 +0.9
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.6 -0.1 +0.5 +0.1 -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.6 -0.1 +0.2 -0.2 -1.7
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.4 +0.0 +0.6 +0.2 -2.3
carbon source D-Glucose 5 mg/ml (C) -1.6 -0.3 +0.4 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.6 +0.4 -0.2 +0.7 -1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 -0.4 -0.1 -1.3 +0.2 +1.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -1.0 +0.2 -0.9 +0.6 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -0.4 -0.1 -0.9 +0.4 +1.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.5 +0.3 +1.1 +0.2 -1.6
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.0 +0.3 +1.9 +0.5 -1.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 +0.5 +1.5 +0.4 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.4 +0.2 +0.6 +0.3 +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.4 +0.2 -0.2 +0.4 +1.8
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HMPREF1058_RS05015
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HMPREF1058_RS05010
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HMPREF1058_RS05000
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HMPREF1058_RS04995
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