Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS04915	HMPREF1058_RS04910	HMPREF1058_RS04905	HMPREF1058_RS04900	HMPREF1058_RS04895
carbon source	Amylose from potato 5 mg/ml (C)	-0.4	-2.3	-0.6	-0.2	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	-0.4	-1.5	-0.4	-0.3	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	-0.3	-2.4	-0.8	+0.4	+0.4
carbon source	Pectic galactan from potato 5mg/ml (C)	-0.3	-1.5	-0.8	-0.0	-0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	-0.1	-1.3	-0.4	-0.6	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	-0.5	-1.0	-0.7	-0.4	+0.2
carbon source	Dextran 5 mg/ml (C)	+0.0	-0.2	-1.6	-0.2	-0.4
carbon source	beta-Cyclodextrin 5 mg/ml (C)	-0.4	-0.7	-1.0	-0.1	-0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3	-0.3	-1.0	-0.5	-0.3	+0.0
carbon source	Pectic galactan from potato 5mg/ml (C)	-0.4	-1.0	-0.7	-0.2	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	-0.6	-0.5	-0.6	+0.0	-0.2
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.1	-1.1	-0.7	-0.1	-0.0
carbon source	beta-Cyclodextrin 5 mg/ml (C)	-0.1	-0.7	-1.1	-0.0	+0.1
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	-0.2	-0.8	-0.6	-0.2	+0.1
carbon source	L-Arabinose 20 mM (C)	-0.0	-1.7	-0.1	+0.1	+0.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.3	-1.7	-0.3	+0.3	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	-0.1	-0.6	-1.0	+0.1	+0.1
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.1	-0.7	-0.5	-0.4	+0.2
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.2	-1.2	+0.4	-0.2	-0.2
carbon source	Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C)	-0.1	-1.3	-0.5	+0.0	+0.5
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	-0.0	-1.5	+0.1	-0.3	+0.4
carbon source	D-Mannose 20 mM (C)	+0.3	-1.7	-0.1	+0.3	+0.0
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	-0.4	-0.8	+0.1	-0.5	+0.4
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.6	-1.3	+0.1	+0.5	+0.1
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	-0.6	-0.1	-0.3	+0.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	-0.1	-1.0	-0.2	-0.3	+0.6
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	-0.6	+0.5	-0.6	+0.3
carbon source	D-Galactose 20 mM (C)	-0.2	-0.6	-0.5	+0.1	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2	-0.4	+0.6	-0.6	+0.0	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7	-0.2	+0.6	+0.5	-0.5	+0.2