Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotidesHMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotidesHMPREF1058_RS04800 and HMPREF1058_RS04795 are separated by 7 nucleotidesHMPREF1058_RS04795 and HMPREF1058_RS04790 are separated by 28 nucleotides HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413 _RS04810 HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895 _RS04805 HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462 _RS04800 HMPREF1058_RS04795: HMPREF1058_RS04795 - ankyrin repeat domain-containing protein, at 316,470 to 317,444 _RS04795 HMPREF1058_RS04790: HMPREF1058_RS04790 - DUF1266 domain-containing protein, at 317,473 to 318,510 _RS04790
Group Condition HMPREF1058_RS04810 HMPREF1058_RS04805 HMPREF1058_RS04800 HMPREF1058_RS04795 HMPREF1058_RS04790
carbon source Sucrose 20 mM (C) -0.3 -0.6 -0.9 -0.6 +0.1
carbon source D-Mannose (C) -0.1 -0.4 -1.2 -0.3 +0.2
carbon source Dextran 5 mg/ml (C) -0.6 -0.5 -0.7 +0.4 -0.1
carbon source D-Mannose (C) -0.2 +0.5 -1.1 -0.4 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre 5 mg/ml (C) -0.1 +0.5 -0.4 -0.6 -0.7
carbon source NAG (C) +0.1 -1.0 -0.4 -0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +0.0 +0.4 +0.0 -1.2 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.1 +0.7 -0.4 -0.7 -0.8
carbon source Sucrose 20 mM (C) -0.1 -0.4 -1.0 +0.1 +0.6
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +0.5 -1.1 -0.1 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.1 +0.7 -0.8 -0.0 -0.3
carbon source Amylose from potato 5 mg/ml (C) -0.2 -0.9 +0.5 +0.6 +0.2
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.3 -0.5 +1.2 -0.4 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.1 +1.0 -0.2 -0.5 -0.2
carbon source Polygalacturonic 5 mg/ml (C) +0.1 +0.4 +0.7 -0.6 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 -0.1 +0.2 +1.0 -0.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +0.2 +1.0 -0.5 +0.0 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 -0.1 +1.4 +0.1 -0.4 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.2 +1.0 -0.0 +0.6 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.3 +1.2 -0.2 -0.2 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 +0.2 +1.1 -0.5 -0.2 +0.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.1 -0.2 +1.4 -0.4 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.1 +1.2 +0.3 -0.2 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.2 +1.0 +0.1 +0.3 -0.5
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +1.7 +0.0 -0.6
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.3 +0.2 +1.4 -0.0 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.1 +1.3 +0.6 -0.0 +0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.2 +0.1 +1.9 +0.1 -0.2
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.0 +0.4 +1.1 +0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.3 +1.4 +0.4 +0.5 -0.1
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HMPREF1058_RS04810
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HMPREF1058_RS04805
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HMPREF1058_RS04790
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