Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04710 and HMPREF1058_RS04705 are separated by 24 nucleotidesHMPREF1058_RS04705 and HMPREF1058_RS04700 overlap by 1 nucleotidesHMPREF1058_RS04700 and HMPREF1058_RS04695 are separated by 97 nucleotidesHMPREF1058_RS04695 and HMPREF1058_RS04690 are separated by 24 nucleotides HMPREF1058_RS04710: HMPREF1058_RS04710 - 50S ribosomal protein L25/general stress protein Ctc, at 329,514 to 330,110 _RS04710 HMPREF1058_RS04705: HMPREF1058_RS04705 - aminoacyl-tRNA hydrolase, at 330,135 to 330,698 _RS04705 HMPREF1058_RS04700: HMPREF1058_RS04700 - RNA-binding S4 domain-containing protein, at 330,698 to 331,126 _RS04700 HMPREF1058_RS04695: HMPREF1058_RS04695 - HIT family protein, at 331,224 to 331,649 _RS04695 HMPREF1058_RS04690: HMPREF1058_RS04690 - cation:proton antiporter, at 331,674 to 333,941 _RS04690
Group Condition HMPREF1058_RS04710 HMPREF1058_RS04705 HMPREF1058_RS04700 HMPREF1058_RS04695 HMPREF1058_RS04690
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. -0.5 -0.1 -2.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. -0.0 -0.1 -2.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. -0.1 +0.0 -1.8
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. -0.2 -0.1 -1.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. -0.4 -0.4 -1.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. +0.4 -0.5 -1.6
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. -0.2 -0.3 -1.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. -0.5 +0.0 -1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 N.D. N.D. -0.5 -0.9 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 N.D. N.D. -0.7 -0.7 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. N.D. -0.8 -0.5 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. N.D. -0.7 -0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 N.D. N.D. -0.6 -0.4 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. N.D. -0.1 +0.2 -1.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. +1.2 -0.8 -1.1
carbon source D-Glucose (C) N.D. N.D. +0.4 +0.4 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. N.D. +0.3 -0.8 +0.6
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. N.D. +0.6 +0.3 -0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 N.D. N.D. +0.5 -0.4 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 N.D. N.D. +0.7 -0.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 N.D. N.D. +0.3 -0.4 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 N.D. N.D. +0.7 -0.4 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 N.D. N.D. +0.8 -0.4 +0.5
carbon source D-Galactose 20 mM (C) N.D. N.D. +0.7 -0.1 +0.6
carbon source beta-Cyclodextrin 5 mg/ml (C) N.D. N.D. +0.5 +0.7 +0.1
carbon source D-Galactose 20 mM (C) N.D. N.D. +0.5 +0.3 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. N.D. +0.4 +0.3 +0.6
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. +0.4 +0.3 +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. N.D. +0.8 -0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. N.D. +0.3 +0.5 +0.8
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