Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04665 and HMPREF1058_RS04660 are separated by 296 nucleotidesHMPREF1058_RS04660 and HMPREF1058_RS04655 are separated by 106 nucleotidesHMPREF1058_RS04655 and HMPREF1058_RS04650 are separated by 37 nucleotidesHMPREF1058_RS04650 and HMPREF1058_RS04645 are separated by 77 nucleotides HMPREF1058_RS04665: HMPREF1058_RS04665 - NigD-like N-terminal domain-containing protein, at 338,541 to 339,296 _RS04665 HMPREF1058_RS04660: HMPREF1058_RS04660 - response regulator, at 339,593 to 343,582 _RS04660 HMPREF1058_RS04655: HMPREF1058_RS04655 - phosphatase PAP2 family protein, at 343,689 to 344,306 _RS04655 HMPREF1058_RS04650: HMPREF1058_RS04650 - 9-O-acetylesterase, at 344,344 to 346,260 _RS04650 HMPREF1058_RS04645: HMPREF1058_RS04645 - type II pantothenate kinase, at 346,338 to 347,162 _RS04645
Group Condition HMPREF1058_RS04665 HMPREF1058_RS04660 HMPREF1058_RS04655 HMPREF1058_RS04650 HMPREF1058_RS04645
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen +0.2 -1.4 -0.6 -0.1 -0.4
carbon source D-Galactose 20 mM (C) +0.4 -1.3 -0.3 -0.3 -0.6
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 -1.3 -0.2 -0.6 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 -1.2 -0.4 -0.1 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.4 -1.4 -0.3 -0.3 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.2 -0.6 -0.7 -0.0 -0.5
carbon source Sucrose 20 mM (C) +0.7 -1.2 -0.2 -0.2 -0.8
carbon source D-Galactose 20 mM (C) +0.8 -1.5 -0.3 -0.1 -0.5
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.3 -1.3 -0.4 -0.0 -0.1
carbon source D-Galactose 20 mM (C) +0.5 -1.1 +0.1 -0.2 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.3 -0.6 -0.4 -0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.3 -0.7 -0.6 +0.0 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 +0.3 -0.9 -0.3 -0.0 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.2 -0.7 -0.1 -0.4 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.7 -0.5 -0.2 -0.0 +0.4
carbon source D-Glucose 20 mM (C) +0.5 -0.8 -0.2 -0.2 -0.3
carbon source Sucrose 20 mM (C) +0.5 -1.0 +0.1 -0.0 -0.3
carbon source D-Galactose (C) +0.6 -0.9 -0.3 -0.0 -0.1
carbon source D-Mannose 20 mM (C) +0.9 -0.7 -0.2 +0.0 -0.5
carbon source D-Glucose 20 mM (C) +0.5 -0.6 +0.2 -0.3 -0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.4 -0.2 +0.2 -0.5 +0.6
carbon source D-Mannose 20 mM (C) +0.7 -0.9 +0.2 +0.1 -0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 +0.6 +0.1 -0.2 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.2 -0.5 +0.6 -0.2 +0.5
carbon source D-Glucose 5 mg/ml (C) -0.5 +0.4 +0.1 +0.2 +0.8
carbon source D-Glucose 5 mg/ml (C) -0.5 +0.4 +0.1 +0.4 +0.7
carbon source D-Maltose 20 mM (C) -0.5 +0.8 +0.5 +0.1 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.6 +0.1 +0.3 +0.6
carbon source D-Maltose 20 mM (C) -0.2 +0.7 +0.7 +0.0 +0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.4 +1.1 +0.4 -0.1 +0.5
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HMPREF1058_RS04665
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HMPREF1058_RS04660
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HMPREF1058_RS04645
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