Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04655 and HMPREF1058_RS04650 are separated by 37 nucleotidesHMPREF1058_RS04650 and HMPREF1058_RS04645 are separated by 77 nucleotidesHMPREF1058_RS04645 and HMPREF1058_RS04640 are separated by 422 nucleotidesHMPREF1058_RS04640 and HMPREF1058_RS04635 are separated by 78 nucleotides HMPREF1058_RS04655: HMPREF1058_RS04655 - phosphatase PAP2 family protein, at 343,689 to 344,306 _RS04655 HMPREF1058_RS04650: HMPREF1058_RS04650 - 9-O-acetylesterase, at 344,344 to 346,260 _RS04650 HMPREF1058_RS04645: HMPREF1058_RS04645 - type II pantothenate kinase, at 346,338 to 347,162 _RS04645 HMPREF1058_RS04640: HMPREF1058_RS04640 - 5S ribosomal RNA, at 347,585 to 347,695 _RS04640 HMPREF1058_RS04635: HMPREF1058_RS04635 - 23S ribosomal RNA, at 347,774 to 350,661 _RS04635
Group Condition HMPREF1058_RS04655 HMPREF1058_RS04650 HMPREF1058_RS04645 HMPREF1058_RS04640 HMPREF1058_RS04635
carbon source Sucrose 20 mM (C) -0.2 -0.2 -0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.7 -0.0 -0.5 N.D. N.D.
carbon source D-Galactose 20 mM (C) -0.3 -0.3 -0.6 N.D. N.D.
carbon source Amylose from potato 5 mg/ml (C) -0.5 -0.1 -0.5 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen -0.6 -0.1 -0.4 N.D. N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.6 -0.1 N.D. N.D.
carbon source D-Galactose 20 mM (C) +0.1 -0.2 -0.8 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.5 +0.1 -0.4 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -0.4 -0.3 +0.3 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.1 -0.4 +0.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.2 -0.5 +0.6 N.D. N.D.
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -0.2 +0.3 +0.4 N.D. N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 -0.1 +0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.6 -0.2 +0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.1 +0.3 +0.7 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.0 +0.3 +0.6 N.D. N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.4 +0.3 +0.3 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) +0.2 +0.3 +0.5 N.D. N.D.
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.3 +0.2 +0.5 N.D. N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 +0.2 +0.7 N.D. N.D.
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.3 +0.2 +0.5 N.D. N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.3 +0.1 +0.5 N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.3 +0.6 N.D. N.D.
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.2 +0.2 +0.5 N.D. N.D.
carbon source D-Maltose 20 mM (C) +0.7 +0.0 +0.3 N.D. N.D.
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.2 +0.4 +0.5 N.D. N.D.
carbon source D-Mannose 2.5 mg/ml (C) +0.1 +0.3 +0.6 N.D. N.D.
carbon source Dextrin from potato starch 5 mg/ml (C) +0.7 +0.2 +0.2 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) +0.1 +0.2 +0.8 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) +0.1 +0.4 +0.7 N.D. N.D.
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HMPREF1058_RS04655
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