Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS21515	HMPREF1058_RS04605	HMPREF1058_RS04600	HMPREF1058_RS04595	HMPREF1058_RS04590
carbon source	Amylose from potato 5 mg/ml (C)	+0.1	-5.2	-0.7	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	-1.7	-2.4	-0.2	N.D.	-1.1
carbon source	Dextran 5 mg/ml (C)	-0.1	+0.4	-0.4	N.D.	-4.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	-0.4	-5.2	+1.2	N.D.	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	-0.9	+0.2	-2.7	N.D.	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	-0.3	+0.2	-0.1	N.D.	-3.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	-0.3	-2.3	+0.2	N.D.	-1.3
carbon source	Dextran 5 mg/ml (C)	-0.1	-0.8	-0.9	N.D.	-1.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	+0.4	-0.8	+0.2	N.D.	-2.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+0.2	-1.5	+0.3	N.D.	-1.5
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.3	-3.1	+1.6	N.D.	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	+0.1	-2.0	+0.8	N.D.	-1.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+0.5	-2.2	+0.5	N.D.	-0.6
carbon source	Polygalacturonic 5 mg/ml (C)	-0.7	-0.3	+0.8	N.D.	-1.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4	-0.4	-1.6	+0.9	N.D.	-0.5
carbon source	D-Galacturonic Acid 20 mM (C)	+0.4	+0.6	-1.4	N.D.	-1.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	-0.1	-2.0	+1.4	N.D.	-0.6
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6	-0.5	-0.1	+0.9	N.D.	-1.7
carbon source	NAG 20 mM (C)	+0.2	+0.7	-0.5	N.D.	-1.7
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	-0.5	-1.9	+0.9	N.D.	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day3	+0.3	-1.0	+0.8	N.D.	-1.0
carbon source	Polygalacturonic 5 mg/ml (C)	-0.5	-1.4	+1.1	N.D.	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	+0.2	-2.4	+0.9	N.D.	+0.2
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	-0.2	-1.1	+1.1	N.D.	-0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3	-0.3	-1.0	+1.3	N.D.	-0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	-0.2	-0.4	+1.5	N.D.	-1.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1	+0.1	+0.7	+1.2	N.D.	-2.3
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	-0.9	-0.7	+1.3	N.D.	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	-0.4	-1.0	+1.6	N.D.	+0.6
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-1.5	+0.5	+2.5	N.D.	+0.5