Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS04585	HMPREF1058_RS04580	HMPREF1058_RS04575	HMPREF1058_RS04570	HMPREF1058_RS04565
carbon source	Amylose from potato 5 mg/ml (C)	-0.2	-3.2	-3.1	+0.1	-1.0
carbon source	polygalacturonic; autoclaved 2.5 mg/ml (C)	-0.4	-0.5	-3.0	-0.8	-0.4
carbon source	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)	+0.1	-2.2	-1.3	-0.7	-0.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.1	-1.3	-1.0	-0.7	-1.1
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-1.1	+0.4	-2.3	+0.1	-0.5
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.3	-2.5	+0.4	-0.6	-0.1
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-2.2	-0.6	+0.4	-0.3	-0.3
carbon source	D-Galacturonic Acid 20 mM (C)	-0.1	-2.1	-0.8	+0.5	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.9	+0.9	-2.8	-1.3	+0.1
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	-0.5	-1.9	+1.0	+0.3	-0.3
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+1.1	-1.7	-0.5	+0.1	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	+1.2	+0.8	-1.3	-1.1	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day4	+0.9	+0.6	-1.5	+0.3	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	+0.9	+1.2	-2.0	+0.1	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	+1.3	+0.6	-1.3	-0.0	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	-0.8	+1.8	+0.6	-0.3	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2	+1.3	+1.8	-2.4	+0.6	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+1.5	+0.9	-0.8	-0.6	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.8	+1.0	-1.4	+0.7	-0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3	+1.6	+1.6	-1.3	-0.2	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5	+1.4	+1.0	+0.6	-0.8	-0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	+1.2	+1.1	-0.6	+0.5	-0.5
carbon source	Pectin from citrus peel (C)	+1.4	+1.0	-0.4	+0.5	-0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3	+1.2	+1.7	+0.3	-0.5	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+1.6	+1.5	-0.5	-0.1	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	+1.6	+1.6	-0.7	+0.7	-0.7
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1	+1.6	+2.0	-0.6	+0.1	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+1.4	+2.4	-0.3	+0.5	-0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1	+1.1	+1.7	+0.1	+0.6	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2	+1.2	+1.2	+1.0	+0.0	+0.3