Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04580 and HMPREF1058_RS04575 are separated by 18 nucleotidesHMPREF1058_RS04575 and HMPREF1058_RS04570 overlap by 4 nucleotidesHMPREF1058_RS04570 and HMPREF1058_RS04565 are separated by 15 nucleotidesHMPREF1058_RS04565 and HMPREF1058_RS04560 are separated by 13 nucleotides HMPREF1058_RS04580: HMPREF1058_RS04580 - hypothetical protein, at 5,777 to 6,175 _RS04580 HMPREF1058_RS04575: HMPREF1058_RS04575 - hypothetical protein, at 6,194 to 6,637 _RS04575 HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710 _RS04570 HMPREF1058_RS04565: HMPREF1058_RS04565 - hypothetical protein, at 7,726 to 8,388 _RS04565 HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863 _RS04560
Group Condition HMPREF1058_RS04580 HMPREF1058_RS04575 HMPREF1058_RS04570 HMPREF1058_RS04565 HMPREF1058_RS04560
carbon source Amylose from potato 5 mg/ml (C) -3.2 -3.1 +0.1 -1.0 +0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -2.2 -1.3 -0.7 -0.4 -0.7
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.5 -3.0 -0.8 -0.4 -0.3
carbon source (+)-Arabinogalactan 5 mg/ml (C) -1.3 -1.0 -0.7 -1.1 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.5 +0.4 -0.6 -0.1 -0.8
carbon source Dextran 5 mg/ml (C) -0.9 +0.6 -0.9 -0.4 -1.3
carbon source D-Galactose 20 mM (C) +0.3 +0.2 -0.7 -0.8 -1.9
carbon source D-Mannose 20 mM (C) -2.4 -0.0 +0.9 +0.1 -1.1
carbon source D-Galacturonic Acid 20 mM (C) -2.1 -0.8 +0.5 -0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.9 -2.8 -1.3 +0.1 +1.5
carbon source D-Mannose (C) +0.6 -0.9 +0.5 +0.0 -1.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.9 -0.7 -0.2 -0.9 +1.1
carbon source D-Maltose 20 mM (C) +1.0 -1.2 -0.2 -0.1 -1.0
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -2.1 +0.4 +0.4 -0.4 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.8 -1.3 -1.1 -0.2 +0.7
carbon source D-Galactose 20 mM (C) -0.1 -2.1 +0.6 +0.6 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -1.6 -0.5 +0.9 -0.1 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +1.2 -2.0 +0.1 -0.2 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -1.2 -0.8 +0.8 -0.4 +1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +1.0 +0.6 -0.8 -0.9 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +1.0 -1.4 +0.7 -0.3 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +1.8 -2.4 +0.6 -0.6 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.6 -1.3 -0.2 -0.6 +1.5
carbon source Pectin from citrus peel (C) +1.0 -0.4 +0.5 -0.6 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.1 -0.6 +0.5 -0.5 +1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +1.6 -0.7 +0.7 -0.7 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.8 +0.6 -0.3 -0.8 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +1.7 +0.3 -0.5 -0.4 +1.3
carbon source D-Galactose (C) +0.8 +1.5 +0.6 +0.3 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +2.4 -0.3 +0.5 -0.4 +1.0
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HMPREF1058_RS04580
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HMPREF1058_RS04575
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HMPREF1058_RS04565
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HMPREF1058_RS04560
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