Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04570 and HMPREF1058_RS04565 are separated by 15 nucleotidesHMPREF1058_RS04565 and HMPREF1058_RS04560 are separated by 13 nucleotidesHMPREF1058_RS04560 and HMPREF1058_RS04555 overlap by 4 nucleotidesHMPREF1058_RS04555 and HMPREF1058_RS04550 overlap by 1 nucleotides HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710 _RS04570 HMPREF1058_RS04565: HMPREF1058_RS04565 - hypothetical protein, at 7,726 to 8,388 _RS04565 HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863 _RS04560 HMPREF1058_RS04555: HMPREF1058_RS04555 - YqaJ viral recombinase family protein, at 8,860 to 9,531 _RS04555 HMPREF1058_RS04550: HMPREF1058_RS04550 - hypothetical protein, at 9,531 to 10,295 _RS04550
Group Condition HMPREF1058_RS04570 HMPREF1058_RS04565 HMPREF1058_RS04560 HMPREF1058_RS04555 HMPREF1058_RS04550
carbon source D-Galactose 20 mM (C) -0.7 -0.8 -1.9 -1.1 -1.3
carbon source Dextran 5 mg/ml (C) -0.9 -0.4 -1.3 -1.9 -1.1
carbon source D-Galactose 20 mM (C) +0.1 -0.3 -0.1 -1.6 -2.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 -0.1 -0.8 -1.2 -1.9
carbon source L-Arabinose 20 mM (C) -0.2 -0.0 -0.9 -1.5 -2.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.8 -0.9 +0.7 +0.0 -2.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -1.1 -0.2 +0.7 +0.1 -2.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.1 +0.1 +0.8 -1.4 -2.8
carbon source Amylose from potato 5 mg/ml (C) +0.1 -1.0 +0.1 +0.4 -2.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -0.5 -0.4 +1.3 -0.5 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.0 -0.4 -0.3 +0.9 -2.9
carbon source D-Mannose 20 mM (C) +0.2 +0.8 -0.5 -0.5 -2.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.6 -0.1 +1.0 +0.5 -2.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.3 -1.2 +0.8 +0.6 -2.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.3 -0.3 +0.9 +0.1 -2.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.3 -0.8 +0.6 +0.8 -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 +0.1 +0.6 +0.7 -2.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 -0.2 -0.6 +1.5 +0.2 -2.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.5 -0.5 +1.4 +0.1 -2.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +0.4 -0.8 +1.3 -0.4 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.4 -0.2 +0.7 +0.9 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +0.4 -0.4 +0.3 +1.1 -2.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -0.8 +0.2 +1.4 +0.7 -2.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.5 -0.4 +1.0 +0.9 -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.6 -0.6 +1.2 +0.5 -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.7 -0.7 +1.2 +0.7 -1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.4 -0.3 +0.8 +0.9 -2.1
carbon source (+)-Arabinogalactan 5 mg/ml (C) -0.7 -1.1 +0.1 +2.0 +0.7
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.2 +1.2 +0.5 +2.1 -0.8
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.8 +0.6 -0.0 -0.7 +2.5
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