Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04560 and HMPREF1058_RS04555 overlap by 4 nucleotidesHMPREF1058_RS04555 and HMPREF1058_RS04550 overlap by 1 nucleotidesHMPREF1058_RS04550 and HMPREF1058_RS04545 are separated by 21 nucleotidesHMPREF1058_RS04545 and HMPREF1058_RS04540 overlap by 8 nucleotides HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863 _RS04560 HMPREF1058_RS04555: HMPREF1058_RS04555 - YqaJ viral recombinase family protein, at 8,860 to 9,531 _RS04555 HMPREF1058_RS04550: HMPREF1058_RS04550 - hypothetical protein, at 9,531 to 10,295 _RS04550 HMPREF1058_RS04545: HMPREF1058_RS04545 - hypothetical protein, at 10,317 to 10,553 _RS04545 HMPREF1058_RS04540: HMPREF1058_RS04540 - hypothetical protein, at 10,546 to 10,728 _RS04540
Group Condition HMPREF1058_RS04560 HMPREF1058_RS04555 HMPREF1058_RS04550 HMPREF1058_RS04545 HMPREF1058_RS04540
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.3 +0.9 -2.9 +1.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 +0.8 -1.4 -2.8 +3.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.6 +0.7 -2.8 +1.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day4 +0.3 +0.4 -2.9 +2.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 +0.2 +0.7 -2.7 +2.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 +0.6 +0.4 -2.7 +2.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 -1.4 -1.4 +0.0 +3.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +0.5 +0.3 -2.4 +2.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.7 +0.1 -2.7 +3.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 +1.3 -0.5 -2.8 +3.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +0.6 +0.5 -2.0 +2.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.7 +0.0 -2.8 +3.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.9 +0.1 -2.7 +3.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.7 +0.9 -2.8 +3.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 +1.3 -0.4 -1.5 +2.5 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 +0.8 +0.2 -2.7 +3.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.7 +0.5 -1.9 +2.9 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.3 +0.6 -2.7 +4.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.8 +0.6 -2.3 +3.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.6 +0.8 -2.4 +3.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +1.0 +0.5 -2.7 +3.9 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +1.0 +0.9 -2.4 +3.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +1.4 +0.1 -2.6 +4.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 +1.1 -1.3 -0.5 +3.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 +1.5 +0.2 -2.3 +4.0 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 +1.0 +0.3 -1.9 +4.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +1.2 +0.5 -1.6 +3.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +1.2 +0.7 -1.6 +3.5 N.D.
carbon source Pectin from citrus peel (C) +1.2 +0.2 -1.7 +4.3 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 +1.4 +0.7 -2.1 +4.1 N.D.
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