Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS21520 and HMPREF1058_RS04525 are separated by 315 nucleotidesHMPREF1058_RS04525 and HMPREF1058_RS04520 are separated by 667 nucleotidesHMPREF1058_RS04520 and HMPREF1058_RS04515 are separated by 3 nucleotidesHMPREF1058_RS04515 and HMPREF1058_RS20295 are separated by 121 nucleotides HMPREF1058_RS21520: HMPREF1058_RS21520 - hypothetical protein, at 11,261 to 11,434 _RS21520 HMPREF1058_RS04525: HMPREF1058_RS04525 - hypothetical protein, at 11,750 to 12,043 _RS04525 HMPREF1058_RS04520: HMPREF1058_RS04520 - hypothetical protein, at 12,711 to 12,926 _RS04520 HMPREF1058_RS04515: HMPREF1058_RS04515 - hypothetical protein, at 12,930 to 13,127 _RS04515 HMPREF1058_RS20295: HMPREF1058_RS20295 - hypothetical protein, at 13,249 to 13,641 _RS20295
Group Condition HMPREF1058_RS21520 HMPREF1058_RS04525 HMPREF1058_RS04520 HMPREF1058_RS04515 HMPREF1058_RS20295
carbon source Dextran 5 mg/ml (C) -3.8 -1.3 -2.6 -1.9 -3.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -4.5 +0.4 -4.6 -0.3 -0.5
carbon source beta-Cyclodextrin 5 mg/ml (C) -3.4 -0.3 -0.6 -0.3 -2.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -3.9 -0.8 -1.4 -0.7 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -2.6 +0.1 -3.2 -0.7 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8 -3.2 -0.5 -3.8 +0.7 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 -2.7 -1.2 -3.0 -0.1 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 -2.7 -0.6 -2.0 -0.9 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -3.8 -0.2 -2.2 +0.0 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 -3.4 +1.0 -0.4 -2.1 -0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 -3.5 +0.3 -3.3 +0.2 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -3.5 -0.2 -3.2 +0.8 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -3.4 -0.0 -2.2 +0.6 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 -3.1 -1.0 -1.7 +0.4 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 -2.6 -1.1 -2.0 +0.4 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 -2.7 -0.4 -2.5 +0.2 +0.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 +0.3 +0.7 -1.4 -4.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -3.4 +0.6 +0.1 -2.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day6 -3.0 -0.7 -1.5 +0.0 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 -2.2 -0.7 -2.0 +0.0 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 -2.5 +0.6 -2.3 +0.1 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7 -3.4 -0.0 -1.6 +1.3 +0.5
carbon source Galactose 1-phosphate dipotassium salt (C) +0.1 -0.0 -1.6 +1.2 -2.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -2.6 -0.5 -1.5 +0.7 +0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -3.5 +0.4 -0.4 +1.0 +0.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -3.3 +0.0 +1.2 +0.0 +1.2
carbon source Pectic galactan from potato 5mg/ml (C) +1.6 +0.4 -1.3 +1.1 -2.4
carbon source D-Maltose 20 mM (C) +1.9 +0.2 -2.1 +1.0 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 -3.4 +1.0 -0.1 +1.8 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -3.4 +0.5 +1.6 +0.2 +1.3
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HMPREF1058_RS21520
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HMPREF1058_RS04525
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HMPREF1058_RS20295
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