Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04515 and HMPREF1058_RS20295 are separated by 121 nucleotidesHMPREF1058_RS20295 and HMPREF1058_RS04510 are separated by 20 nucleotidesHMPREF1058_RS04510 and HMPREF1058_RS04505 are separated by 7 nucleotidesHMPREF1058_RS04505 and HMPREF1058_RS04500 are separated by 91 nucleotides HMPREF1058_RS04515: HMPREF1058_RS04515 - hypothetical protein, at 12,930 to 13,127 _RS04515 HMPREF1058_RS20295: HMPREF1058_RS20295 - hypothetical protein, at 13,249 to 13,641 _RS20295 HMPREF1058_RS04510: HMPREF1058_RS04510 - hypothetical protein, at 13,662 to 14,102 _RS04510 HMPREF1058_RS04505: HMPREF1058_RS04505 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 14,110 to 15,195 _RS04505 HMPREF1058_RS04500: HMPREF1058_RS04500 - hypothetical protein, at 15,287 to 16,786 _RS04500
Group Condition HMPREF1058_RS04515 HMPREF1058_RS20295 HMPREF1058_RS04510 HMPREF1058_RS04505 HMPREF1058_RS04500
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.4 -4.2 -0.7 -0.6 +0.2
carbon source Dextran 5 mg/ml (C) -1.9 -3.3 -0.1 +0.3 +0.1
carbon source Polygalacturonic 5 mg/ml (C) -1.1 -2.5 +0.1 -0.2 -0.3
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.3 -2.6 -0.2 -0.5 -0.3
carbon source Galactose 1-phosphate dipotassium salt (C) +0.4 -2.6 -0.6 -0.4 -0.4
carbon source D-Galactose 20 mM (C) -2.3 -1.0 -0.2 -0.2 +0.2
carbon source D-Glucose (C) -0.3 -2.6 -1.0 +0.3 +0.4
carbon source D-Xylose 20 mM (C) +0.4 -2.6 -0.3 -0.3 -0.1
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) -0.3 -2.6 -0.2 +0.3 -0.1
carbon source Dextran 5 mg/ml (C) +0.2 -2.1 -1.2 -0.1 +0.3
carbon source Dextrin from potato starch 5 mg/ml (C) +0.8 -2.0 -0.5 -0.4 -0.0
carbon source D-Xylose (C) +0.7 -2.0 -0.2 -0.4 -0.3
carbon source Galactose 1-phosphate dipotassium salt (C) +1.2 -2.8 +0.0 -0.3 -0.1
carbon source D-Mannose 20 mM (C) +1.1 -1.6 -0.6 +0.0 -0.3
carbon source Amylose from potato 5 mg/ml (C) +0.6 -2.0 -0.7 +0.6 +0.1
carbon source Pectic galactan from potato 5mg/ml (C) +1.1 -2.4 +0.1 -0.2 +0.1
carbon source Pectic galactan from potato 5mg/ml (C) +1.5 -1.5 -0.5 -0.3 -0.3
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -0.5 -1.7 +1.2 -0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 -2.2 +0.2 +0.5 +0.1 +0.5
carbon source D-Mannose (C) +0.7 -2.4 +0.4 +0.3 +0.5
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.4 -2.2 +0.9 +0.1 +0.3
carbon source D-Maltose 20 mM (C) +1.5 -1.7 -0.2 -0.2 +0.1
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.3 -1.9 +1.1 +0.4 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.4 -1.9 +1.1 +0.1 +0.1
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +1.6 -0.6 -0.5 +0.4 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +1.8 +0.3 +0.1 -0.4 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 +1.2 +1.2 +0.6 +0.1 -0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 +1.2 +1.2 +0.6 +0.3 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +1.7 +0.8 +0.6 +0.4 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +2.0 +1.1 +0.7 +0.5 +0.3
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