Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04430 and HMPREF1058_RS04425 are separated by 912 nucleotidesHMPREF1058_RS04425 and HMPREF1058_RS04420 are separated by 33 nucleotidesHMPREF1058_RS04420 and HMPREF1058_RS04415 are separated by 166 nucleotidesHMPREF1058_RS04415 and HMPREF1058_RS04410 are separated by 1854 nucleotides HMPREF1058_RS04430: HMPREF1058_RS04430 - alpha-1,2-fucosyltransferase, at 37,321 to 38,166 _RS04430 HMPREF1058_RS04425: HMPREF1058_RS04425 - mechanosensitive ion channel, at 39,079 to 39,924 _RS04425 HMPREF1058_RS04420: HMPREF1058_RS04420 - PorT family protein, at 39,958 to 40,635 _RS04420 HMPREF1058_RS04415: HMPREF1058_RS04415 - ion transporter, at 40,802 to 41,563 _RS04415 HMPREF1058_RS04410: HMPREF1058_RS04410 - porin family protein, at 43,418 to 43,815 _RS04410
Group Condition HMPREF1058_RS04430 HMPREF1058_RS04425 HMPREF1058_RS04420 HMPREF1058_RS04415 HMPREF1058_RS04410
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 -1.1 -0.3 -0.8 -0.0 -2.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1 -0.5 +0.1 -0.0 -0.3 -3.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1 -0.3 -0.2 +0.2 +0.1 -2.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.5 +0.3 -1.0 -0.2 -1.4
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) +0.4 +0.1 +0.4 -0.4 -2.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 -0.9 +0.1 -0.9 -0.5 +0.7
carbon source D-Galactose (C) +1.0 -0.0 -0.1 +0.1 -1.9
carbon source Dextran 5 mg/ml (C) +0.2 -0.2 -0.8 +0.9 -1.0
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +1.0 +0.2 +0.1 -0.1 -1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 +1.3 +0.1 +0.3 -0.1 -1.0
carbon source Polygalacturonic 5 mg/ml (C) +1.1 -0.3 -0.5 +0.2 +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +1.7 +1.0 +0.1 -0.1 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day5 +1.2 +0.3 +0.3 -0.1 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day6 +1.2 +0.3 +0.4 +0.1 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day5 +1.4 -0.0 +0.2 +0.2 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 +1.7 +0.1 +0.4 +0.3 +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +1.9 +0.6 +0.2 -0.0 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.1 +0.4 +0.4 +0.0 +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 +1.9 +0.2 +0.2 +0.1 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 +1.3 +0.7 +0.2 -0.0 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +1.9 +0.1 +0.0 +0.3 +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 +1.8 +0.4 +0.5 -0.1 +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.1 +0.4 +0.6 +0.2 +1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.7 +0.1 +0.6 +0.2 +1.7
carbon source Pectin from citrus peel (C) +3.7 +0.4 +0.3 -0.0 -0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +1.2 +0.1 +0.5 +0.3 +1.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +2.0 +0.4 +0.3 -0.2 +1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +2.4 +0.5 +0.3 -0.2 +0.9
carbon source Pectin from citrus peel (C) +3.3 +0.3 +0.2 +0.1 +1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +2.2 +1.8 -0.3 -0.2 +1.7
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HMPREF1058_RS04430
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HMPREF1058_RS04415
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HMPREF1058_RS04410
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