Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS04280	HMPREF1058_RS04275	HMPREF1058_RS04270	HMPREF1058_RS04265	HMPREF1058_RS04260
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.3	-0.4	-3.4	-0.3	-0.3
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	+0.2	+0.0	-3.4	-0.2	-0.3
carbon source	D-Mannose (C)	+0.0	-0.3	-2.3	-0.2	-0.8
carbon source	D-Glucose 5 mg/ml (C)	+0.1	-0.5	-2.0	-1.0	-0.1
nitrogen source	L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.1	+0.2	-2.2	-1.0	-0.5
carbon source	D-Glucose (C)	+0.0	-0.3	-1.1	-1.6	-0.3
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.3	-0.5	-1.0	-1.9	-0.2
carbon source	D-Glucose 5 mg/ml (C)	+0.3	-1.0	-1.1	-0.9	-0.3
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.4	-0.3	-2.1	-1.3	+0.3
carbon source	Sucrose 20 mM (C)	-0.2	+0.0	-2.5	-0.0	-0.3
carbon source	Pectin from apple; autoclaved 2.5 mg/ml (C)	+0.1	-0.6	-2.2	-0.3	+0.1
carbon source	Pectin from citrus peel (C)	-0.0	-0.8	-2.1	-0.3	+0.4
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.2	-0.5	-1.9	-0.5	+0.1
nitrogen source	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.1	+0.5	-1.1	-1.4	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	-0.2	+0.9	-3.2	+0.1	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2	-0.5	+0.2	-1.7	+0.2	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	-0.1	+0.4	-1.7	+0.1	+1.0
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.0	+0.3	-1.9	+0.6	+0.7
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.0	+0.1	+1.8	-1.1	-0.5
carbon source	D-Glucose (C)	+0.2	-0.5	+1.9	-1.1	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	-0.9	+1.0	-0.5	+0.2	+0.7
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.1	-0.5	+0.7	+1.8	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	-0.4	+0.2	+1.6	-0.1	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day3	-0.4	+0.4	+1.4	+0.3	+0.5
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2	-0.2	+0.9	+0.9	+0.4	+0.7
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.1	+0.5	+2.0	+0.4	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.0	+0.2	+1.7	+0.8	+0.2
carbon source	Galactose 1-phosphate dipotassium salt (C)	+0.0	-0.4	+1.9	+1.9	-0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2	-0.4	+0.9	+1.1	+0.6	+0.9
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	-0.2	+0.3	+2.7	+0.2	+1.4