Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS04170	HMPREF1058_RS21070	HMPREF1058_RS04165	HMPREF1058_RS21530	HMPREF1058_RS04160
carbon source	Mannan from Saccharomyces cerevisiae 5 mg/ml (C)	+0.1	-0.9	+0.4	N.D.	-3.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	-1.2	-0.8	+0.5	N.D.	-2.1
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.3	+0.4	-0.2	N.D.	-2.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	-0.7	-0.7	-0.7	N.D.	-0.8
carbon source	Polygalacturonic 5 mg/ml (C)	-0.9	-1.2	+0.2	N.D.	-0.6
carbon source	Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)	-0.2	-0.5	-0.6	N.D.	-1.1
carbon source	polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)	-0.4	-1.8	-0.3	N.D.	+0.4
carbon source	Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)	+0.0	-1.1	-0.2	N.D.	-0.8
carbon source	Dextran 5 mg/ml (C)	-0.2	-1.5	+0.1	N.D.	-0.3
carbon source	a-Cyclodextrin (C)	-0.5	-0.6	+0.3	N.D.	-0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.3	+0.2	-0.1	N.D.	-1.9
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.5	-1.7	-0.0	N.D.	+0.8
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.0	+0.2	+0.5	N.D.	-1.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7	+0.1	+0.6	+0.1	N.D.	-1.4
carbon source	D-Glucose (C)	-0.2	-0.9	-0.6	N.D.	+1.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5	-0.5	+0.5	+0.3	N.D.	-0.9
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1	-0.4	-0.7	+0.3	N.D.	+0.7
carbon source	NAG 2.5 mg/ml (C)	-0.0	-0.8	-0.4	N.D.	+1.0
carbon source	Galactose 1-phosphate dipotassium salt (C)	-0.2	-1.1	+0.1	N.D.	+1.4
carbon source	(+)-Arabinogalactan; autoclaved 5 mg/ml (C)	+0.7	-0.9	+0.5	N.D.	+0.1
carbon source	D-Glucose 5 mg/ml (C)	-0.4	-0.6	+0.5	N.D.	+0.9
carbon source	beta-Cyclodextrin 2.5 mg/ml (C)	-0.2	-0.6	-0.0	N.D.	+1.3
carbon source	Polygalacturonic 5 mg/ml (C)	-0.4	-0.9	+0.7	N.D.	+1.4
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	-0.3	-0.4	N.D.	+1.9
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.4	+1.2	-0.1	N.D.	+0.5
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.4	-0.4	-0.4	N.D.	+1.6
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.1	-0.2	-0.0	N.D.	+1.8
carbon source	D-Mannose 20 mM (C)	-0.2	+0.0	+0.6	N.D.	+1.6
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.4	-0.6	+1.3	N.D.	+1.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9	-0.1	+0.6	+1.2	N.D.	+0.5