Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS04100 and HMPREF1058_RS04095 are separated by 3 nucleotidesHMPREF1058_RS04095 and HMPREF1058_RS04090 are separated by 73 nucleotidesHMPREF1058_RS04090 and HMPREF1058_RS04085 are separated by 25 nucleotidesHMPREF1058_RS04085 and HMPREF1058_RS04080 are separated by 283 nucleotides HMPREF1058_RS04100: HMPREF1058_RS04100 - signal recognition particle-docking protein FtsY, at 115,649 to 116,608 _RS04100 HMPREF1058_RS04095: HMPREF1058_RS04095 - 30S ribosomal protein S12 methylthiotransferase RimO, at 116,612 to 117,910 _RS04095 HMPREF1058_RS04090: HMPREF1058_RS04090 - HU family DNA-binding protein, at 117,984 to 118,256 _RS04090 HMPREF1058_RS04085: HMPREF1058_RS04085 - HU family DNA-binding protein, at 118,282 to 119,712 _RS04085 HMPREF1058_RS04080: HMPREF1058_RS04080 - AAA family ATPase, at 119,996 to 120,991 _RS04080
Group Condition HMPREF1058_RS04100 HMPREF1058_RS04095 HMPREF1058_RS04090 HMPREF1058_RS04085 HMPREF1058_RS04080
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 N.D. -0.2 -1.7 -1.0 -4.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 N.D. -0.1 -1.0 -1.0 -4.6
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 N.D. +0.0 -1.4 -0.7 -4.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 N.D. +0.2 -2.9 -0.7 -3.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 N.D. -0.2 -0.9 -0.8 -4.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 N.D. -0.4 -2.7 -0.2 -3.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 N.D. +0.0 -2.8 -0.6 -2.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 N.D. -0.2 -1.2 -0.7 -4.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day4 N.D. -0.1 -1.0 -0.5 -4.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. -0.5 -0.7 -0.6 -4.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 N.D. -0.1 -0.8 -0.7 -4.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 N.D. -0.1 -0.8 -1.0 -4.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 N.D. -0.8 -1.4 -0.7 -3.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 N.D. -0.2 -0.8 -0.7 -4.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 N.D. -0.2 -1.1 -0.8 -3.7
carbon source D-Xylose 20 mM (C) N.D. +0.1 -0.8 -0.3 -4.6
carbon source a-Cyclodextrin (C) N.D. +0.7 -1.5 -0.2 -4.2
carbon source a-Cyclodextrin (C) N.D. +0.8 -0.8 -0.4 -4.2
carbon source D-Galactose (C) N.D. +0.7 -0.4 -1.0 -3.8
carbon source D-Galactose 20 mM (C) N.D. +1.1 -0.3 -0.6 -4.6
carbon source D-Glucose (C) N.D. +0.9 -1.5 -0.0 -3.7
carbon source D-Galactose (C) N.D. +1.0 -1.3 -0.6 -3.3
carbon source Fructooligosaccharides (FOS) 5 mg/ml (C) N.D. +0.3 +0.5 +0.2 -4.9
carbon source D-Glucose 20 mM (C) N.D. +0.5 +0.6 +0.3 -4.9
carbon source L-Fucose 20 mM (C) N.D. +0.3 +0.8 +0.3 -5.0
carbon source D-Arabinose 20 mM (C) N.D. -0.1 +1.0 +0.2 -4.6
carbon source Dextrin from potato starch 5 mg/ml (C) N.D. +0.2 +0.9 +0.3 -4.6
carbon source D-Maltose 20 mM (C) N.D. +0.6 +0.8 +0.5 -4.6
carbon source Dextrin from potato starch 5 mg/ml (C) N.D. +0.6 +1.1 +0.5 -4.6
carbon source D-Maltose 20 mM (C) N.D. +0.9 +1.0 +0.1 -4.5
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