Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03960 and HMPREF1058_RS03955 are separated by 11 nucleotidesHMPREF1058_RS03955 and HMPREF1058_RS03950 are separated by 57 nucleotidesHMPREF1058_RS03950 and HMPREF1058_RS03945 are separated by 100 nucleotidesHMPREF1058_RS03945 and HMPREF1058_RS03940 are separated by 8 nucleotides HMPREF1058_RS03960: HMPREF1058_RS03960 - DNA polymerase III subunit delta, at 150,907 to 151,923 _RS03960 HMPREF1058_RS03955: HMPREF1058_RS03955 - AMP nucleosidase, at 151,935 to 152,711 _RS03955 HMPREF1058_RS03950: HMPREF1058_RS03950 - type I restriction enzyme HsdR N-terminal domain-containing protein, at 152,769 to 153,218 _RS03950 HMPREF1058_RS03945: HMPREF1058_RS03945 - hypothetical protein, at 153,319 to 154,110 _RS03945 HMPREF1058_RS03940: HMPREF1058_RS03940 - Nif3-like dinuclear metal center hexameric protein, at 154,119 to 155,213 _RS03940
Group Condition HMPREF1058_RS03960 HMPREF1058_RS03955 HMPREF1058_RS03950 HMPREF1058_RS03945 HMPREF1058_RS03940
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day5 N.D. N.D. +1.6 N.D. +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. N.D. +1.1 N.D. +1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 N.D. N.D. +1.0 N.D. +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4 N.D. N.D. +1.0 N.D. +1.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 N.D. N.D. +0.9 N.D. +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 N.D. N.D. +0.9 N.D. +1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 N.D. N.D. +1.0 N.D. +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 N.D. N.D. +1.2 N.D. +1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 N.D. N.D. +1.2 N.D. +1.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 N.D. N.D. +1.7 N.D. +0.9
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 N.D. N.D. +1.1 N.D. +1.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day5 N.D. N.D. +1.8 N.D. +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day6 N.D. N.D. +2.0 N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 N.D. N.D. +2.4 N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day6 N.D. N.D. +2.5 N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day7 N.D. N.D. +2.5 N.D. +0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day6 N.D. N.D. +2.7 N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 N.D. N.D. +3.1 N.D. +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 N.D. N.D. +2.7 N.D. +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 N.D. N.D. +3.2 N.D. +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 N.D. N.D. +3.3 N.D. +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 N.D. N.D. +3.3 N.D. +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 N.D. N.D. +3.1 N.D. +0.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 N.D. N.D. +3.6 N.D. +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7 N.D. N.D. +3.4 N.D. +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 N.D. N.D. +3.6 N.D. +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. N.D. +3.7 N.D. +0.5
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day7 N.D. N.D. +3.5 N.D. +0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 N.D. N.D. +3.8 N.D. +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 N.D. N.D. +4.4 N.D. +0.7
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