Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03885 and HMPREF1058_RS03880 are separated by 0 nucleotidesHMPREF1058_RS03880 and HMPREF1058_RS03875 are separated by 78 nucleotidesHMPREF1058_RS03875 and HMPREF1058_RS03870 are separated by 445 nucleotidesHMPREF1058_RS03870 and HMPREF1058_RS03865 overlap by 4 nucleotides HMPREF1058_RS03885: HMPREF1058_RS03885 - insulinase family protein, at 165,140 to 166,426 _RS03885 HMPREF1058_RS03880: HMPREF1058_RS03880 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 166,427 to 167,185 _RS03880 HMPREF1058_RS03875: HMPREF1058_RS03875 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 167,264 to 167,638 _RS03875 HMPREF1058_RS03870: HMPREF1058_RS03870 - TetR/AcrR family transcriptional regulator, at 168,084 to 168,701 _RS03870 HMPREF1058_RS03865: HMPREF1058_RS03865 - TolC family protein, at 168,698 to 169,996 _RS03865
Group Condition HMPREF1058_RS03885 HMPREF1058_RS03880 HMPREF1058_RS03875 HMPREF1058_RS03870 HMPREF1058_RS03865
carbon source beta-Cyclodextrin 5 mg/ml (C) -1.0 N.D. N.D. -0.5 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 N.D. N.D. -1.6 -0.0
carbon source Dextran 5 mg/ml (C) -0.6 N.D. N.D. +0.3 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 +0.4 N.D. N.D. -1.0 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.8 N.D. N.D. -0.7 +0.0
carbon source NAG (C) +0.9 N.D. N.D. -0.5 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 +0.9 N.D. N.D. -0.9 +0.2
carbon source D-Glucose 20 mM (C) +0.6 N.D. N.D. -0.6 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.9 N.D. N.D. -0.6 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +1.1 N.D. N.D. -0.6 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.9 N.D. N.D. -0.4 +0.3
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.2 N.D. N.D. -0.6 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.2 N.D. N.D. -0.2 +0.0
carbon source D-Mannose 20 mM (C) +1.2 N.D. N.D. -0.3 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.5 N.D. N.D. -0.6 +0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +1.2 N.D. N.D. -0.1 +0.1
carbon source D-Mannose 20 mM (C) +1.0 N.D. N.D. -0.0 +0.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.7 N.D. N.D. +0.5 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.1 N.D. N.D. +0.1 +0.2
carbon source Sucrose 20 mM (C) +1.4 N.D. N.D. -0.3 +0.4
carbon source D-Mannose (C) +1.2 N.D. N.D. +0.5 -0.1
carbon source D-Mannose 20 mM (C) +1.3 N.D. N.D. -0.2 +0.5
carbon source D-Glucose 20 mM (C) +1.0 N.D. N.D. +0.3 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.3 N.D. N.D. +1.0 +0.4
carbon source D-Mannose 20 mM (C) +1.3 N.D. N.D. +0.2 +0.3
carbon source D-Galactose 20 mM (C) +1.6 N.D. N.D. +0.0 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +2.0 N.D. N.D. +0.1 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.7 N.D. N.D. +1.5 +0.3
carbon source D-Arabinose 20 mM (C) +2.7 N.D. N.D. +0.0 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +2.4 N.D. N.D. +0.5 +0.4
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