Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotidesHMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotidesHMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotidesHMPREF1058_RS03785 and HMPREF1058_RS03780 overlap by 29 nucleotides HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282 _RS03800 HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824 _RS03795 HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592 _RS03790 HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443 _RS03785 HMPREF1058_RS03780: HMPREF1058_RS03780 - DUF1460 domain-containing protein, at 187,415 to 188,299 _RS03780
Group Condition HMPREF1058_RS03800 HMPREF1058_RS03795 HMPREF1058_RS03790 HMPREF1058_RS03785 HMPREF1058_RS03780
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -3.8 -2.6 -2.0 +0.3 -0.1
carbon source D-Galactose 20 mM (C) -5.5 +0.2 -0.8 -0.9 -0.0
carbon source D-Galactose 20 mM (C) -5.7 -0.3 -0.4 -0.4 -0.1
carbon source D-Galactose (C) -5.0 -0.8 -0.8 -0.4 +0.1
carbon source Sucrose 20 mM (C) -5.4 -0.3 -0.6 -0.3 -0.1
carbon source D-Galactose (C) -5.6 -0.8 -0.5 -0.2 +0.4
carbon source D-Galactose 20 mM (C) -5.5 -0.5 -0.2 -0.6 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.2 -3.1 -1.2 +0.1 +0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -2.5 -2.6 -0.8 -0.3 -0.1
carbon source D-Fructose 20 mM (C) -6.3 -0.1 +0.2 -0.1 +0.1
carbon source D-Mannose 20 mM (C) -6.2 -0.2 -0.0 +0.0 +0.2
carbon source D-Glucose 20 mM (C) -6.0 +0.2 -0.3 +0.1 -0.0
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) -5.6 -0.4 -0.2 +0.0 +0.2
carbon source D-Fructose 20 mM (C) -5.7 -0.2 +0.1 -0.1 +0.1
carbon source NAG 20 mM (C) -5.6 -0.3 -0.1 -0.1 +0.2
carbon source D-Glucose 20 mM (C) -5.8 -0.2 -0.1 +0.1 +0.1
carbon source D-Glucose-6-Phosphate 20 mM (C) -5.9 -0.1 +0.1 +0.1 -0.0
carbon source D-Fructose 20 mM (C) -5.9 -0.1 -0.0 -0.1 +0.3
carbon source Beta-Lactose 20 mM (C) -5.8 -0.2 +0.0 +0.1 +0.1
carbon source Polygalacturonic ultrapure 5mg/ml (C) -5.4 -0.1 -0.4 +0.1 +0.2
carbon source Fructooligosaccharides (FOS) 5 mg/ml (C) -5.9 -0.3 +0.4 -0.1 +0.4
carbon source D-Mannose 20 mM (C) -5.6 -0.2 +0.0 -0.3 +0.4
carbon source D-Raffinose 20 mM (C) -5.8 -0.0 +0.0 +0.2 +0.2
carbon source D-Mannose (C) -4.5 -0.7 -0.6 +0.0 +0.3
carbon source Fructooligosaccharides (FOS) 5 mg/ml (C) -5.6 +0.0 +0.2 -0.2 +0.2
carbon source Inulin from chicory; autoclaved 2.5 mg/ml (C) -5.5 +0.1 -0.4 +0.2 +0.3
carbon source L-Arabinose 20 mM (C) -5.6 +0.1 -0.2 +0.1 +0.2
carbon source D-Glucose 20 mM (C) -4.7 +0.2 -0.9 +0.1 +0.3
carbon source D-Maltose 20 mM (C) -5.4 +0.2 +0.6 -0.1 +0.0
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -5.2 +0.3 -0.3 +0.4 +0.2
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HMPREF1058_RS03800
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