Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03785 and HMPREF1058_RS03780 overlap by 29 nucleotidesHMPREF1058_RS03780 and HMPREF1058_RS03775 are separated by 124 nucleotidesHMPREF1058_RS03775 and HMPREF1058_RS03770 are separated by 189 nucleotidesHMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443 _RS03785 HMPREF1058_RS03780: HMPREF1058_RS03780 - DUF1460 domain-containing protein, at 187,415 to 188,299 _RS03780 HMPREF1058_RS03775: HMPREF1058_RS03775 - biotin/lipoyl-binding protein, at 188,424 to 190,199 _RS03775 HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892 _RS03770 HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665 _RS03765
Group Condition HMPREF1058_RS03785 HMPREF1058_RS03780 HMPREF1058_RS03775 HMPREF1058_RS03770 HMPREF1058_RS03765
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 -0.2 -0.1 -0.4 -3.9 -2.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 -0.2 -0.2 -0.4 -3.6 -2.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day2 -0.2 -0.3 -0.4 -3.5 -2.3
carbon source D-Galactose 20 mM (C) -0.6 +0.3 +0.2 -3.3 -3.0
carbon source D-Galactose (C) -0.4 +0.1 -0.1 -4.6 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 -0.3 +0.0 -0.6 -3.0 -2.3
carbon source Sucrose 20 mM (C) -0.1 +0.1 +0.6 -3.9 -2.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day5 -0.4 -0.0 -0.1 -2.9 -2.0
carbon source D-Galactose 20 mM (C) -0.4 -0.1 +0.5 -4.1 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 -0.1 -0.1 -0.2 -2.7 -2.1
carbon source D-Galactose 20 mM (C) -0.9 -0.0 +0.5 -3.3 -1.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day6 -0.2 +0.0 +0.1 -2.3 -1.9
carbon source D-Galactose (C) -0.2 +0.4 +0.3 -3.7 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day1 +0.3 -0.5 -0.9 -2.2 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 -0.5 -0.1 -0.6 -1.7 -1.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 -0.1 -0.0 -0.0 -2.0 -1.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1 -0.2 -0.2 -0.4 -1.9 -1.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1 +0.4 -0.5 -0.7 -2.1 -0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day1 -0.0 -0.1 -0.4 -1.7 -1.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.1 -0.3 -1.1 -1.5 -0.7
carbon source Sucrose 20 mM (C) -0.3 -0.1 +0.5 -2.2 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 +0.5 -0.6 -1.1 -1.9 -0.3
carbon source D-Mannose 20 mM (C) -0.1 +0.2 +0.4 -2.2 -1.7
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 +0.7 -0.6 -0.8 -1.5 -1.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 +0.2 -0.3 -0.8 -1.6 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.4 -0.1 -1.1 -1.0 -1.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day9 -0.1 +0.3 +0.1 -1.7 -1.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 +0.4 -0.6 -0.9 -1.4 +0.2
carbon source D-Mannose 20 mM (C) -0.3 +0.4 +0.7 -2.3 -0.5
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.3 +0.7 +1.5 +1.2
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HMPREF1058_RS03785
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HMPREF1058_RS03780
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HMPREF1058_RS03765
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