Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03715 and HMPREF1058_RS03710 are separated by 216 nucleotidesHMPREF1058_RS03710 and HMPREF1058_RS03705 are separated by 418 nucleotidesHMPREF1058_RS03705 and HMPREF1058_RS03700 are separated by 35 nucleotidesHMPREF1058_RS03700 and HMPREF1058_RS03695 are separated by 1 nucleotides HMPREF1058_RS03715: HMPREF1058_RS03715 - RluA family pseudouridine synthase, at 207,860 to 208,786 _RS03715 HMPREF1058_RS03710: HMPREF1058_RS03710 - hypothetical protein, at 209,003 to 209,683 _RS03710 HMPREF1058_RS03705: HMPREF1058_RS03705 - type II restriction endonuclease, at 210,102 to 211,559 _RS03705 HMPREF1058_RS03700: HMPREF1058_RS03700 - DNA cytosine methyltransferase, at 211,595 to 212,761 _RS03700 HMPREF1058_RS03695: HMPREF1058_RS03695 - N-6 DNA methylase, at 212,763 to 214,628 _RS03695
Group Condition HMPREF1058_RS03715 HMPREF1058_RS03710 HMPREF1058_RS03705 HMPREF1058_RS03700 HMPREF1058_RS03695
carbon source (+)-Arabinogalactan; filtered 2.5 mg/ml (C) -0.6 +0.6 +0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 -0.5 +0.5 +0.0 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 -0.5 +0.4 +0.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day6 -0.5 +0.4 +0.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 -0.4 +0.3 +0.4 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 -0.4 +0.4 +0.3 N.D. N.D.
carbon source Pectin from citrus peel (C) +0.5 -0.3 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 -0.3 +0.4 +0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 -0.1 +0.5 +0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.2 +0.4 +0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6 -0.2 +0.6 +0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 -0.2 +0.7 +0.5 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.2 +0.6 +0.6 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.3 +0.7 +0.7 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 -0.1 +0.7 +0.4 N.D. N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 +0.5 +0.4 N.D. N.D.
carbon source D-Glucose 5 mg/ml (C) +0.3 +0.6 +0.3 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 -0.1 +0.5 +0.6 N.D. N.D.
carbon source D-Galactose (C) +0.6 +0.5 +0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.3 +0.5 +0.4 N.D. N.D.
carbon source Galactose 1-phosphate dipotassium salt (C) +0.3 +0.7 +0.2 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 +0.5 +0.7 +0.0 N.D. N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.3 +0.5 +0.4 N.D. N.D.
carbon source Polygalacturonic 5 mg/ml (C) +0.4 +0.6 +0.3 N.D. N.D.
carbon source Amylose from potato 5 mg/ml (C) +1.0 +0.2 +0.2 N.D. N.D.
carbon source Arabinan from sugar beet 5mg/ml (C) +0.5 +0.8 +0.1 N.D. N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1 +0.2 +0.7 +0.6 N.D. N.D.
carbon source D-Galactose (C) +0.5 +0.6 +0.4 N.D. N.D.
carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml (C) +0.5 +0.8 +0.3 N.D. N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.6 +0.8 +0.3 N.D. N.D.
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HMPREF1058_RS03715
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HMPREF1058_RS03710
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HMPREF1058_RS03700
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HMPREF1058_RS03695
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