Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS03685	HMPREF1058_RS03680	HMPREF1058_RS03675	HMPREF1058_RS03670	HMPREF1058_RS03665
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.2	-0.6	-0.3	N.D.	+0.3
carbon source	D-Mannose 20 mM (C)	+0.3	+0.1	-0.7	N.D.	+0.1
carbon source	Dextran 5 mg/ml (C)	+0.3	-0.5	+0.2	N.D.	-0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day1	+0.6	+0.5	-0.8	N.D.	-0.0
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9	-0.2	+0.7	-0.0	N.D.	+0.2
nitrogen source	L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen	+0.0	-0.1	+0.9	N.D.	+0.2
carbon source	D-Mannose 20 mM (C)	+0.4	-0.1	+0.4	N.D.	+0.4
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.2	+0.1	+0.9	N.D.	-0.1
carbon source	D-Glucose (C)	+0.4	+0.2	+0.4	N.D.	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4	+0.4	+0.2	+0.4	N.D.	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4	+0.4	+0.3	+0.3	N.D.	+0.2
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen	+0.3	+0.2	+0.5	N.D.	+0.2
carbon source	Arabinan from sugar beet 5mg/ml (C)	+0.2	+0.3	+0.5	N.D.	+0.2
carbon source	D-Galacturonic Acid 20 mM (C)	+0.1	+0.0	+0.6	N.D.	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14	-0.1	+0.4	+0.5	N.D.	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9	-0.0	+0.6	+0.4	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	+0.6	-0.2	+0.7	N.D.	+0.2
carbon source	Sucrose 20 mM (C)	+0.5	+0.4	+0.4	N.D.	+0.1
carbon source	Arabinan from sugar beet 5mg/ml (C)	+0.3	+0.1	+0.5	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.4	+0.2	+0.1	N.D.	+0.6
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.4	+0.3	+0.6	N.D.	+0.1
carbon source	Polygalacturonic 5 mg/ml (C)	+0.2	+0.4	+0.4	N.D.	+0.5
carbon source	Polygalacturonic 5 mg/ml (C)	+0.3	+0.4	+0.6	N.D.	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	+0.3	+0.3	+0.5	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3	+0.4	+0.1	+0.6	N.D.	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.6	+0.3	+0.4	N.D.	+0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5	+0.3	+0.4	+0.6	N.D.	+0.2
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day1	+0.6	+0.5	+0.2	N.D.	+0.2
carbon source	beta-Cyclodextrin 5 mg/ml (C)	+0.6	+0.3	+0.8	N.D.	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse3; day1	+0.4	+0.3	+0.8	N.D.	+0.5