Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03515 and HMPREF1058_RS03510 are separated by 33 nucleotidesHMPREF1058_RS03510 and HMPREF1058_RS03505 are separated by 1 nucleotidesHMPREF1058_RS03505 and HMPREF1058_RS03500 are separated by 115 nucleotidesHMPREF1058_RS03500 and HMPREF1058_RS03495 are separated by 10 nucleotides HMPREF1058_RS03515: HMPREF1058_RS03515 - phenylalanine--tRNA ligase subunit beta, at 262,781 to 265,243 _RS03515 HMPREF1058_RS03510: HMPREF1058_RS03510 - YebC/PmpR family DNA-binding transcriptional regulator, at 265,277 to 266,017 _RS03510 HMPREF1058_RS03505: HMPREF1058_RS03505 - TIGR03905 family TSCPD domain-containing protein, at 266,019 to 266,264 _RS03505 HMPREF1058_RS03500: HMPREF1058_RS03500 - DEAD/DEAH box helicase, at 266,380 to 268,743 _RS03500 HMPREF1058_RS03495: HMPREF1058_RS03495 - YjbH domain-containing protein, at 268,754 to 269,563 _RS03495
Group Condition HMPREF1058_RS03515 HMPREF1058_RS03510 HMPREF1058_RS03505 HMPREF1058_RS03500 HMPREF1058_RS03495
carbon source D-Galactose 20 mM (C) N.D. -4.9 -0.5 +0.2 +0.4
carbon source D-Glucose 20 mM (C) N.D. -4.2 +0.2 -0.3 -0.1
carbon source D-Mannose 20 mM (C) N.D. -4.6 +0.1 -0.0 +0.1
carbon source D-Mannose (C) N.D. -3.8 -1.0 -0.1 +0.5
carbon source D-Mannose 20 mM (C) N.D. -4.6 -0.0 +0.0 +0.3
carbon source D-Mannose 20 mM (C) N.D. -4.7 +0.4 +0.1 +0.1
carbon source D-Glucose 20 mM (C) N.D. -4.2 -0.1 +0.2 +0.0
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day3 N.D. -4.6 +0.1 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 N.D. -4.3 +0.0 +0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day3 N.D. -4.3 +0.1 +0.2 +0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 N.D. -4.4 +0.4 +0.0 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day1 N.D. -4.6 +0.2 +0.4 +0.3
carbon source D-Galactose 20 mM (C) N.D. -4.1 +0.1 +0.0 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day4 N.D. -4.2 -0.0 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day2 N.D. -4.2 +0.3 +0.1 +0.2
carbon source D-Mannose 20 mM (C) N.D. -4.3 +0.1 +0.6 -0.0
carbon source D-Galactose 20 mM (C) N.D. -3.6 +0.2 -0.5 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day3 N.D. -4.3 +0.3 +0.1 +0.4
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day4 N.D. -4.1 +0.1 +0.1 +0.3
carbon source D-Glucose 20 mM (C) N.D. -4.0 +0.5 -0.3 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day2 N.D. -4.5 +0.5 +0.1 +0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day3 N.D. -4.1 +0.2 +0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -3.9 -0.1 +0.3 +0.3
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day4 N.D. -4.1 +0.4 +0.1 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 N.D. -3.9 +0.5 +0.2 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 N.D. -3.8 +0.5 +0.2 +0.2
carbon source L-Arabinose 20 mM (C) N.D. -4.0 +0.6 +0.2 +0.3
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 N.D. -3.8 +0.4 +0.0 +0.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) N.D. +4.2 +0.7 +0.2 -0.0
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) N.D. +4.9 +0.9 +0.2 +0.1
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HMPREF1058_RS03515
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HMPREF1058_RS03500
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HMPREF1058_RS03495
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