Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03490 and HMPREF1058_RS03485 are separated by 185 nucleotidesHMPREF1058_RS03485 and HMPREF1058_RS03480 are separated by 3 nucleotidesHMPREF1058_RS03480 and HMPREF1058_RS03475 are separated by 179 nucleotidesHMPREF1058_RS03475 and HMPREF1058_RS03470 are separated by 16 nucleotides HMPREF1058_RS03490: HMPREF1058_RS03490 - glycosyltransferase family 4 protein, at 269,575 to 270,663 _RS03490 HMPREF1058_RS03485: HMPREF1058_RS03485 - RloB domain-containing protein, at 270,849 to 271,484 _RS03485 HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708 _RS03480 HMPREF1058_RS03475: HMPREF1058_RS03475 - radical SAM protein, at 272,888 to 273,961 _RS03475 HMPREF1058_RS03470: HMPREF1058_RS03470 - glycosyltransferase, at 273,978 to 275,156 _RS03470
Group Condition HMPREF1058_RS03490 HMPREF1058_RS03485 HMPREF1058_RS03480 HMPREF1058_RS03475 HMPREF1058_RS03470
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.6 -1.0 +0.3 -0.8 -0.7
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6 -0.8 -0.1 +0.1 -1.4 -0.1
carbon source Dextran 5 mg/ml (C) +0.6 -2.4 +0.0 +0.2 -0.8
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.3 -0.0 -1.1 +0.3 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 -0.6 -0.1 +0.5 -0.7 -1.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 -0.8 +0.4 +0.3 -1.8 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day9 +0.1 -0.5 +0.3 -1.8 +0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +0.3 -0.0 +0.1 -1.7 -0.4
carbon source Sucrose 20 mM (C) -0.4 +0.4 -0.6 -0.9 +0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 +0.4 +0.4 -0.0 -1.0 -0.9
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day7 +0.4 +0.5 +0.3 -1.6 -0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +0.9 -0.1 -0.3 -1.3 -0.1
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 +0.4 +0.5 -0.1 -1.4 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7 +0.2 +0.3 +0.4 -1.4 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day5 +0.5 +0.8 +0.0 -1.6 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day7 +0.7 +0.3 -0.1 -0.9 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day9 +1.0 +0.4 -0.2 -1.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day4 +0.4 +0.6 +0.1 -1.0 -0.4
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day9 +0.5 +0.0 -0.1 -1.6 +0.8
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 -0.5 +1.2 -0.1 -0.8 +0.0
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +1.4 +0.0 +0.1 -1.3 -0.2
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day4 +0.5 +0.6 +0.2 -0.8 -0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6 -0.0 +0.8 -0.2 -1.0 +0.5
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day7 +0.9 +0.3 +0.2 -1.0 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.4 -1.0 +0.1 +1.0 -0.2
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 +0.2 +0.7 -0.0 -0.9 +0.6
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day9 +1.0 +0.2 +0.5 -0.9 +0.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.3 +0.0 -0.9 +0.7 -0.1
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 +0.7 +0.8 +0.3 -0.5 +0.7
carbon source Pectic galactan from potato 5mg/ml (C) +1.4 +1.5 +0.3 +0.3 +0.1
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HMPREF1058_RS03490
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HMPREF1058_RS03485
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HMPREF1058_RS03475
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HMPREF1058_RS03470
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