Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

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500 ntHMPREF1058_RS03460 and HMPREF1058_RS03455 are separated by 21 nucleotidesHMPREF1058_RS03455 and HMPREF1058_RS03450 are separated by 39 nucleotidesHMPREF1058_RS03450 and HMPREF1058_RS03445 are separated by 128 nucleotidesHMPREF1058_RS03445 and HMPREF1058_RS21110 are separated by 179 nucleotides HMPREF1058_RS03460: HMPREF1058_RS03460 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 276,384 to 277,574 _RS03460 HMPREF1058_RS03455: HMPREF1058_RS03455 - hypothetical protein, at 277,596 to 277,811 _RS03455 HMPREF1058_RS03450: HMPREF1058_RS03450 - hypothetical protein, at 277,851 to 278,297 _RS03450 HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690 _RS03445 HMPREF1058_RS21110: HMPREF1058_RS21110 - DUF4248 domain-containing protein, at 280,870 to 281,076 _RS21110
Group Condition HMPREF1058_RS03460 HMPREF1058_RS03455 HMPREF1058_RS03450 HMPREF1058_RS03445 HMPREF1058_RS21110
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1 -0.1 +0.8 -1.2 -1.5 N.D.
carbon source Arabinan from sugar beet 5mg/ml (C) +0.1 +0.3 -2.1 +0.2 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day6 +0.7 +0.5 -1.8 +0.1 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.5 -0.7 +1.1 -0.3 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.1 +1.1 -1.3 -0.2 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) -1.0 +0.6 +0.6 -0.4 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day5 +0.7 +0.9 -1.2 +0.4 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day1 -0.8 +1.2 +0.7 +0.1 N.D.
carbon source Polygalacturonic 5 mg/ml (C) +0.9 +1.5 -1.1 +0.2 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) -0.3 +1.4 -0.1 +0.9 N.D.
carbon source beta-Cyclodextrin 5 mg/ml (C) +0.6 +1.2 -0.6 +0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4 +0.4 +1.7 -0.1 +0.3 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5 -0.2 +1.1 +0.7 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day3 +0.0 +1.1 +0.9 +0.6 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse4; day2 +0.5 +1.0 +0.3 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 +0.2 +1.0 +0.9 +0.5 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day5 +0.1 +1.4 +0.5 +0.7 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 +0.5 +1.5 +0.5 +0.2 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 +0.1 +0.9 +1.2 +0.6 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7 +0.5 +1.2 +0.1 +1.1 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day9 +1.1 +0.6 +1.2 +0.1 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day6 +0.1 +1.1 +0.8 +1.0 N.D.
carbon source (+)-Arabinogalactan 5 mg/ml (C) +0.7 +1.6 -0.0 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse20; day14 +0.7 +0.9 +1.2 +0.3 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.3 +2.4 +0.5 +0.1 N.D.
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +2.2 +0.3 +0.7 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day4 -0.4 +1.9 +0.9 +1.0 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5 +0.5 +0.9 +1.3 +0.8 N.D.
mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 +0.6 +2.0 +0.4 +0.8 N.D.
mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 +0.2 +2.6 +0.8 +0.4 N.D.
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