Fitness for 5 genes in Phocaeicola vulgatus CL09T03C04

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HMPREF1058_RS03420	HMPREF1058_RS03415	HMPREF1058_RS03410	HMPREF1058_RS03405	HMPREF1058_RS03400
nitrogen source	Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.0	-0.2	-0.3	-0.8	-0.7
nitrogen source	L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.2	-0.2	-0.5	-0.6	-0.1
carbon source	Dextran 5 mg/ml (C)	+0.1	-0.2	-0.1	-1.3	+0.4
carbon source	Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)	-0.4	+0.6	-0.0	-0.1	-0.7
carbon source	(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)	-0.1	+0.1	-0.5	-0.5	+0.6
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8	+0.6	+0.4	+0.3	-0.8	-0.3
carbon source	D-Galactose 20 mM (C)	-0.1	-0.0	+0.7	-0.7	+0.5
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day1	-0.0	+0.3	-0.8	+0.5	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day7	+0.5	+0.4	+0.4	-0.5	-0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day7	+0.6	+0.4	+0.3	-0.4	-0.1
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day6	+0.4	+0.5	-0.1	-0.3	+0.4
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day7	+0.2	+0.7	-0.2	+0.5	-0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day1	+0.3	+0.7	-0.0	-0.2	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day5	+0.4	+0.3	+0.2	+0.5	-0.0
carbon source	D-Galactose 20 mM (C)	+0.3	+0.1	+0.5	+0.0	+0.5
carbon source	D-Mannose (C)	+0.3	+0.2	+0.2	+0.5	+0.4
carbon source	(+)-Arabinogalactan 5 mg/ml (C)	+0.2	+0.3	+0.1	+0.1	+0.8
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day7	+0.1	+0.6	+0.3	+0.2	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4	+0.5	+0.2	+0.1	+0.5	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3	+0.5	+0.1	+0.4	+0.3	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day5	+0.5	+0.4	+0.2	+0.3	+0.3
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2	+0.5	+0.7	-0.0	+0.3	+0.3
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day4	+0.6	+0.5	+0.4	+0.2	+0.1
mouse	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day6	+0.5	+0.5	+0.6	-0.0	+0.1
carbon source	Pectic galactan from potato 5mg/ml (C)	+0.4	+0.9	+0.4	-0.4	+0.5
carbon source	Pectic galactan from potato 5mg/ml (C)	+0.5	+0.8	+0.1	+0.2	+0.4
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day6	+0.6	+0.7	+0.2	+0.4	+0.2
mouse	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2	+0.5	+0.5	+0.2	+0.5	+0.5
carbon source	Sucrose 20 mM (C)	+0.2	+0.1	+0.8	+0.6	+0.5
nitrogen source	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.2	+0.6	+0.1	+1.2	+0.8